PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00805.50 | ||||||||
Common Name | JCGZ_21634, LOC105649728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 78aa MW: 9016.31 Da PI: 10.1493 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.8 | 1.2e-32 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey++ Jcr4S00805.50 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYAN 74 79***********************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.03E-41 | 17 | 76 | No hit | No description |
SuperFamily | SSF55455 | 7.72E-31 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-34 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-28 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-34 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-34 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 78 aa Download sequence Send to blast |
MAYPSDSRET SPQRRMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSLD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-23 | 16 | 78 | 1 | 63 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF343121 | 1e-124 | JF343121.1 Jatropha curcas AGAMOUS-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001292936.1 | 5e-49 | floral homeotic protein AGAMOUS | ||||
Refseq | XP_012091860.1 | 5e-49 | floral homeotic protein AGAMOUS isoform X1 | ||||
Swissprot | Q40885 | 3e-43 | AG_PETHY; Floral homeotic protein AGAMOUS | ||||
Swissprot | Q43585 | 3e-43 | AG_TOBAC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | F2YNG6 | 1e-47 | F2YNG6_JATCU; AGAMOUS-like protein | ||||
STRING | EOY27872 | 1e-43 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 2e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105649728 |
Publications ? help Back to Top | |||
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