PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00784.10

Common Name

JCGZ_04472, LOC105633836

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 453aa MW: 49436.9 Da PI: 7.0534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00784.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.5e-05	335	373	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Jcr4S00784.10 335 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 373 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.458	323	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-11	333	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.18E-5	333	377	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-9	337	380	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MESANLHHHQ HQLQGQLVTY SSLSSPSSHG AASSHAWTQD NTLNLISSES NFNPNCNGVA 60 LNPRQKNETL IPPLNGSMIP DLSFHWNDNH NSDVAEECFT NHSTHDLHQL SKIKQELSDS 120 FPKFTDMLNS PSSIEDSSHL SPSPTAYIKD ERKDMSDLSE KLLLKTLSSG FPINGYHFSP 180 PQIFSNCTDS SFGTSMPSRG SFSQIYPSIN ISNLNRSPSP SPSPSPSPSP SISGSSFDMN 240 LQALDLLTCT RFSGSFGQSS HNNNNLAMYN GVDRMQQQPS HIQSCSPNKV SSFITTEMTE 300 AKRPNNSLME PKATQAAQKK SRLESRASCP PFKVRKEKLG DRIAALQQLV APFGKTDTAS 360 VLMEAIGYIK FLQNQVETLS VPYMRSSRKK TSTRTAQTFQ GSGPEEEDDE PRKDLRSRGL 420 CLVPLSCMSY ITGDGNGGGG GGIWPPPNFG GGT

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MESANLHHHQ HQLQGQLVTY SSLSSPSSHG AASSHAWTQD NTLNLISSES NFNPNCNGVA  60
LNPRQKNETL IPPLNGSMIP DLSFHWNDNH NSDVAEECFT NHSTHDLHQL SKIKQELSDS  120
FPKFTDMLNS PSSIEDSSHL SPSPTAYIKD ERKDMSDLSE KLLLKTLSSG FPINGYHFSP  180
PQIFSNCTDS SFGTSMPSRG SFSQIYPSIN ISNLNRSPSP SPSPSPSPSP SISGSSFDMN  240
LQALDLLTCT RFSGSFGQSS HNNNNLAMYN GVDRMQQQPS HIQSCSPNKV SSFITTEMTE  300
AKRPNNSLME PKATQAAQKK SRLESRASCP PFKVRKEKLG DRIAALQQLV APFGKTDTAS  360
VLMEAIGYIK FLQNQVETLS VPYMRSSRKK TSTRTAQTFQ GSGPEEEDDE PRKDLRSRGL  420
CLVPLSCMSY ITGDGNGGGG GGIWPPPNFG GGT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071911.1	0.0	transcription factor bHLH110 isoform X1
TrEMBL	A0A067KQX7	0.0	A0A067KQX7_JATCU; Uncharacterized protein
STRING	XP_002510430.1	1e-170	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4045	32	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	8e-61	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105633836

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]