PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00730.60
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family M-type_MADS
Protein Properties Length: 70aa    MW: 8029.35 Da    PI: 10.4733
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00730.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.73.5e-291161151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien   rqvtfskRrng+lKKA+ELSvLCdaevav+ifs++g+l e++s
  Jcr4S00730.60 11 KRIENVKSRQVTFSKRRNGLLKKAYELSVLCDAEVAVMIFSQEGRLSEFAS 61
                   79***********************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.5E-36362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.969363IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
CDDcd002655.51E-34562No hitNo description
PRINTSPR004045.1E-30525IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-28564IPR002100Transcription factor, MADS-box
PfamPF003193.5E-261259IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-302540IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-304061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MAKVRGKIQM KRIENVKSRQ VTFSKRRNGL LKKAYELSVL CDAEVAVMIF SQEGRLSEFA  60
SKEYVSTETN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-18563361Myocyte-specific enhancer factor 2B
1tqe_Q1e-18563361Myocyte-specific enhancer factor 2B
1tqe_R1e-18563361Myocyte-specific enhancer factor 2B
1tqe_S1e-18563361Myocyte-specific enhancer factor 2B
6c9l_A1e-18563361Myocyte-specific enhancer factor 2B
6c9l_B1e-18563361Myocyte-specific enhancer factor 2B
6c9l_C1e-18563361Myocyte-specific enhancer factor 2B
6c9l_D1e-18563361Myocyte-specific enhancer factor 2B
6c9l_E1e-18563361Myocyte-specific enhancer factor 2B
6c9l_F1e-18563361Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012090345.11e-36MADS-box protein AGL42 isoform X1
RefseqXP_020540633.11e-36MADS-box protein AGL42 isoform X1
RefseqXP_020540634.17e-37MADS-box protein AGL42 isoform X2
RefseqXP_020540635.18e-37MADS-box protein AGL42 isoform X3
SwissprotQ9FIS13e-27AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A067JEU32e-35A0A067JEU3_JATCU; Uncharacterized protein
STRINGXP_002510866.12e-30(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.48e-30AGAMOUS-like 42