PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00730.30

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 483aa MW: 51551.8 Da PI: 6.8577

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00730.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.8	5.6e-36	89	161	3	74
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.e 74 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Jcr4S00730.30 89 TAKRPSKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIEATGTGTVPAIAVsI 161 5799***********************************************************7777744321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.512	94	148	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.8E-29	94	170	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0031347	Biological Process	regulation of defense response

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MASSRHHTIE EIDREQSITP NFSSSETSMV DPPDPQTDGG PESTILPKEE EFTDSDGHEL 60 GDNNNNNNNS LPISLLQVPK SSNTRALVTA KRPSKDRHTK VEGRGRRIRM PATCAARIFQ 120 LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS INGTLKIPTT SPARPDGDEL 180 LPKKRRKRPS NSDFIDVNEQ QTSVSSGLAP ISPTAAATLP NYGGGSTQGL VPFWPMGTFM 240 LPQSGSGSNQ SQLWAIPAAA TPFFNVAARP ISSFVSAMQP GVQLGGVVGV GVGVGGSAGV 300 SNSIGSGGSS SQMGSMSSSS GTNNTGGGSN TNTGTAQMLR DFSLEIYDKK ELQFLVFLMD 360 GLASLEASDL RRANCGVLFF GSTWAWPACA VCVDACRGQQ GQWWWRVDQA EWFNEGQQFL 420 SRDVARVPRN LGPLIVFLRL SELCSPSMAQ AFRSFSDSVR MTAGLANTRL LHSCFVGACS 480 RTA

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MASSRHHTIE EIDREQSITP NFSSSETSMV DPPDPQTDGG PESTILPKEE EFTDSDGHEL  60
GDNNNNNNNS LPISLLQVPK SSNTRALVTA KRPSKDRHTK VEGRGRRIRM PATCAARIFQ  120
LTRELGHKSD GETIRWLLEH AEPAIIEATG TGTVPAIAVS INGTLKIPTT SPARPDGDEL  180
LPKKRRKRPS NSDFIDVNEQ QTSVSSGLAP ISPTAAATLP NYGGGSTQGL VPFWPMGTFM  240
LPQSGSGSNQ SQLWAIPAAA TPFFNVAARP ISSFVSAMQP GVQLGGVVGV GVGVGGSAGV  300
SNSIGSGGSS SQMGSMSSSS GTNNTGGGSN TNTGTAQMLR DFSLEIYDKK ELQFLVFLMD  360
GLASLEASDL RRANCGVLFF GSTWAWPACA VCVDACRGQQ GQWWWRVDQA EWFNEGQQFL  420
SRDVARVPRN LGPLIVFLRL SELCSPSMAQ AFRSFSDSVR MTAGLANTRL LHSCFVGACS  480
RTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	188	PKKRRKRP
2	182	186	KKRRK

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00064	PBM	Transfer from AT5G51910	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090342.1	0.0	transcription factor TCP19
Swissprot	Q9LT89	1e-81	TCP19_ARATH; Transcription factor TCP19
TrEMBL	A0A067JS29	0.0	A0A067JS29_JATCU; Uncharacterized protein
STRING	XP_002510862.1	1e-152	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-76	TCP family protein