PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00722.50

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

G2-like

Protein Properties

Length: 244aa MW: 28001.7 Da PI: 8.4777

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00722.50	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.5	9.9e-31	115	169	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rW+ +LH++Fve+v+++GG++kAtPk+il++mk kgLt+ hvkSHLQkYR+ Jcr4S00722.50 115 KKRIRWSDDLHRKFVECVNSIGGADKATPKAILKMMKSKGLTIFHVKSHLQKYRS 169 78****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.165	112	172	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-16	113	169	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.4E-28	113	170	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	115	170	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	119	168	IPR001005	SANT/Myb domain
Pfam	PF14379	4.8E-14	196	241	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MDGGSQLGHQ ILEEAKMSSS IPASHLDHLP SPFFANQSYL DFQQQLEYEI ATSLSPLQVP 60 EPNNAKMPHS CENFENNPEL IFPTEQEKSS SARDLERASL ISSSGSSRPV FSSDKKRIRW 120 SDDLHRKFVE CVNSIGGADK ATPKAILKMM KSKGLTIFHV KSHLQKYRSE KIICEXKTDE 180 RTISDMPQLY MKKTLKIKEA LQLQLDVEKH IHQQLEIQRQ LQLQIEENGR QLKLMLQQQQ 240 KLNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-21	115	171	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020539942.1	1e-158	myb family transcription factor PHL5-like
Swissprot	Q0WVU3	2e-50	PHL5_ARATH; Myb family transcription factor PHL5
TrEMBL	B9SWI4	1e-57	B9SWI4_RICCO; Transcription factor, putative
STRING	XP_002530353.1	2e-58	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF26963	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.2	1e-34	G2-like family protein