PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00720.20
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family WRKY
Protein Properties Length: 536aa    MW: 58441.5 Da    PI: 8.4368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00720.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.61.5e-34255311259
                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Jcr4S00720.20 255 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 311
                    8****************************************.***************8 PP
2WRKY102.42.6e-32426484159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                    ldDgy+WrKYGqK+vk +++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Jcr4S00720.20 426 LDDGYRWRKYGQKVVKCNPYPRSYYKCTTPGCKVRKHVERAATDPKAVITTYEGKHNHD 484
                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-31241313IPR003657WRKY domain
PROSITE profilePS5081123.801249313IPR003657WRKY domain
SuperFamilySSF1182909.02E-27252313IPR003657WRKY domain
SMARTSM007746.7E-39254312IPR003657WRKY domain
PfamPF031062.3E-26255311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.2E-36411486IPR003657WRKY domain
SuperFamilySSF1182901.57E-28418486IPR003657WRKY domain
PROSITE profilePS5081136.954421486IPR003657WRKY domain
SMARTSM007743.6E-37426485IPR003657WRKY domain
PfamPF031061.6E-24427484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAENGAQRQQ QQPPLPAASS SSSPPKNSSP ASSRPTTITL PPRSFNETIF NTGSGIGVNM  60
GLGFSPGPMT LVSSFFSDSD DFKSFSQLLA GAMASPAAAN NNNKLSFPSP PLLQEDKSSA  120
ADVSKPNNLS IVPPPPMFSL TPGLSPMALL DTPGLGLFSP QGPFGMTHQQ ALAQVTAQAA  180
QAHSHMHVQA QYPSTLSSAS TSLTQVTSVS TNTTTRQEML TSVQDPSSSV KESSDFSYSD  240
QRFQASSLAV DKPADDGYNW RKYGQKQVKG SEFPRSYYKC THPNCPVKKK VERSLDGQVT  300
EIIYKGQHNH QPPQPNKRAK DAGTSNGNSD NQSNFELASQ LQGGNVNKLK DRKDQESSQA  360
TPEHLSGTSD SEEVGDTETG MKENDEDEPD RKRRNTEVRV TEPASSHRTV TEPRIIVQTT  420
SEVDLLDDGY RWRKYGQKVV KCNPYPRSYY KCTTPGCKVR KHVERAATDP KAVITTYEGK  480
HNHDLPAAKG SIHSTVNSNS AELKQQDMEK QDNRRDLGSN NQQPIARLRL KEGQIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-44255487878Probable WRKY transcription factor 4
2lex_A8e-44255487878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4700070.0KC470007.1 Jatropha curcas WRKY transcription factor 05 (WRKY05) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020533720.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLM9TIE50.0M9TIE5_JATCU; WRKY transcription factor 05
STRINGcassava4.1_006823m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-159WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]