PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00715.70 | ||||||||
Common Name | JCGZ_18955, LOC105643499 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 136aa MW: 14771.8 Da PI: 10.4428 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.2 | 2.7e-19 | 29 | 62 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ CgttkTplWR gp g+k+LCnaCG++ rkk+ Jcr4S00715.70 29 CADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKK 62 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.9E-13 | 23 | 62 | No hit | No description |
PROSITE profile | PS50114 | 12.743 | 23 | 59 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 9.4E-16 | 23 | 79 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.2E-16 | 27 | 63 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.70E-13 | 28 | 63 | No hit | No description |
Pfam | PF00320 | 4.1E-17 | 29 | 63 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 29 | 54 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence Send to blast |
MLDPNEKGSE PEDMSSKSTE GDNQQKKSCA DCGTTKTPLW RGGPAGPKSL CNACGIRSRK 60 KKRDSLGLSR AASEKKARKA SSNSNRLGDG LKQRLLALGR EVLMQRSTVE KQRRKLGEEE 120 QAAVLLMALS YGSVYA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00335 | DAP | Transfer from AT3G06740 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012084018.1 | 1e-93 | GATA transcription factor 15 | ||||
Swissprot | Q8LG10 | 4e-52 | GAT15_ARATH; GATA transcription factor 15 | ||||
TrEMBL | A0A067K6I5 | 2e-92 | A0A067K6I5_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_018617m | 5e-77 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06740.1 | 8e-51 | GATA transcription factor 15 |
Link Out ? help Back to Top | |
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Entrez Gene | 105643499 |
Publications ? help Back to Top | |||
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