PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00712.110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7264.5 Da PI: 10.8429 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 104.3 | 4.2e-33 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Jcr4S00712.110 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.3E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.515 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.39E-38 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 3.53E-31 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-34 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-34 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.6E-34 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_B | 1e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_C | 1e-20 | 1 | 61 | 1 | 61 | MEF2C |
5f28_D | 1e-20 | 1 | 61 | 1 | 61 | MEF2C |
6byy_A | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 61 | 1 | 61 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM236432 | 5e-75 | HM236432.1 Gossypium hirsutum MADS16 mRNA, complete cds. | |||
GenBank | JF271886 | 5e-75 | JF271886.1 Gossypium hirsutum SEPALLATA3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016438828.1 | 3e-37 | PREDICTED: MADS-box protein CMB1-like | ||||
Swissprot | Q03489 | 4e-37 | AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog | ||||
TrEMBL | A0A438DXH4 | 2e-37 | A0A438DXH4_VITVI; Agamous-like MADS-box protein AGL9-like | ||||
STRING | cassava4.1_033922m | 1e-37 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03710.3 | 1e-38 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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