PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Jcr4S00708.10 | ||||||||
Common Name | JCGZ_18680, LOC105641664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
|
||||||||
Family | ZF-HD | ||||||||
Protein Properties | Length: 246aa MW: 27070.9 Da PI: 7.2611 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.8 | 5.2e-33 | 44 | 99 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k rY+eClkNhA+ +GghavDGCgEfmp+ g+egt +alkCaAC+CHRnFHR+e++e Jcr4S00708.10 44 KPRYRECLKNHAVGIGGHAVDGCGEFMPA-GAEGTLDALKCAACNCHRNFHRKETNE 99 679*************************9.999*********************876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-22 | 27 | 95 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 7.5E-30 | 46 | 97 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.1E-30 | 46 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.453 | 47 | 96 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 171 | 245 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.37E-20 | 171 | 244 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-24 | 183 | 239 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MEFEDQEEHD EEEEMDLPAS YDSLGNSTRV KMTSSGAETG HSTKPRYREC LKNHAVGIGG 60 HAVDGCGEFM PAGAEGTLDA LKCAACNCHR NFHRKETNET TNPGGGGGGG GELFFHGHPH 120 PHHLQVPQFT PYYRTPAGYL HVAPPQQRPL ALPSTSGGQS REDQEDVSNP SGGGFGSGGG 180 SSRKRFRTKF TQDQKERMLS LAERLGWRIQ KHDEAVVQQF CNETGVKRHV LKVWMHNNKH 240 TLGKKP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 3e-27 | 184 | 241 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020537997.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6YXH5 | 6e-80 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A067KBY6 | 0.0 | A0A067KBY6_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_034411m | 1e-127 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-66 | homeobox protein 22 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 105641664 |
Publications ? help Back to Top | |||
---|---|---|---|
|