PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00700.100
Common NameJCGZ_11464
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 376aa    MW: 43282.4 Da    PI: 7.2357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00700.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-17134180148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll ++v++ G + W+ Ia++++ gR +kqc++rw+++l
   Jcr4S00700.100 134 KGQWTIEEDRLLTQLVEKNGLRKWSHIAQMLP-GRIGKQCRERWHNHL 180
                      799*****************************.*************97 PP
2Myb_DNA-binding54.33.1e-17186228145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd+ l++++++ G++ W+ Ia++++ gRt++++k++w+
   Jcr4S00700.100 186 KDVWSEEEDKVLIQVHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 228
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.72129184IPR017930Myb domain
SuperFamilySSF466892.55E-31131227IPR009057Homeodomain-like
SMARTSM007176.7E-15133182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-27135188IPR009057Homeodomain-like
PfamPF139218.0E-17137194No hitNo description
CDDcd001675.22E-14137180No hitNo description
PROSITE profilePS5129420.807185235IPR017930Myb domain
SMARTSM007174.4E-16185233IPR001005SANT/Myb domain
CDDcd001672.69E-12189231No hitNo description
Gene3DG3DSA:1.10.10.603.4E-22189233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MFGVQTGSNF ESFDAFPYGS SSTNMDYFYD YECKPFAAEH NKGGHGQVMD NFSLTLPNRS  60
NNPTDIMGSN QGHMSLNLQG MEGINFLVPD EVSCVTANDN THYQKKICVN NNNYRAQPST  120
KRTCKERKKH NVVKGQWTIE EDRLLTQLVE KNGLRKWSHI AQMLPGRIGK QCRERWHNHL  180
RPDIKKDVWS EEEDKVLIQV HAEIGNKWAE IAKRLPGRTE NSIKNHWNAT KRKQYSKRKC  240
RSKNPRGSLL QDYIKSLNLD SSAPPPTGIR YQPPKSSANS YAMDYSTITK VAANQPQKNN  300
TVEFCQNNND NIRLVPNSCD DFNADFDFDE KFFEEGCCSF DSLLDEKSFE MDVNPLMDFE  360
VKKELDLVEM IYQTNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-431322342104C-Myb DNA-Binding Domain
1msf_C7e-431322342104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346390.0KM034639.1 Jatropha curcas clone JcMYB019 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012080530.20.0transcription factor MYB98
SwissprotQ9S7L21e-92MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A067K7T20.0A0A067K7T2_JATCU; MYB family protein
STRINGcassava4.1_023016m1e-163(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-89myb domain protein 98
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]