PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00680.80
Common NameJCGZ_14068, LOC105642658
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 271aa    MW: 31271.7 Da    PI: 4.6209
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00680.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l+++v+ +G g+W++ ar+ g++Rt+k+c++rw++yl
    Jcr4S00680.80 24 KGPWTVEEDAILAEYVNIHGEGRWNAAARCAGLKRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding48.71.7e-1577120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
    Jcr4S00680.80  77 RGNITLQEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 120
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0291971IPR017930Myb domain
SuperFamilySSF466894.87E-3121118IPR009057Homeodomain-like
SMARTSM007171.1E-142373IPR001005SANT/Myb domain
PfamPF002492.8E-162471IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222578IPR009057Homeodomain-like
CDDcd001678.31E-112671No hitNo description
PROSITE profilePS5129423.13672126IPR017930Myb domain
SMARTSM007171.1E-1376124IPR001005SANT/Myb domain
PfamPF002492.2E-1477120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-2279125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MDALVNNYDN YVGYENEEDT DIRKGPWTVE EDAILAEYVN IHGEGRWNAA ARCAGLKRTG  60
KSCRLRWLNY LRPDVRRGNI TLQEQLLILE LHSRWGNRWS KIAQYLPGRT DNEIKNYWRT  120
RVQKQAKQLK CDVNSKQFRD AMRYIWIPRL IERIRAASES SPAQPTVSIN SNYDEIISNE  180
VTAGGDWVDP NFMPEQSGTP SDSLETQVSA VSDLTDNQNP SSSMQNGSGL YLEEESGCWG  240
WNGEMEQHNN GLSMESLWNE ENIWFLQQQL M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-241912622128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346640.0KM034664.1 Jatropha curcas clone JcMYB044 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082951.10.0transcription factor MYB78
TrEMBLA0A067JWQ20.0A0A067JWQ2_JATCU; MYB family protein
STRINGcassava4.1_013877m1e-121(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-81myb domain protein 78
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]