PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00635.50
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 795aa    MW: 91352.7 Da    PI: 8.3345
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00635.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.51.7e-2166159190
           FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    +fY e+A+++GFs+r+++++ +    +  t+r fvC + g++  ++++++k +r+r+++r+gC+a ++++k++   + +w+vt + ++HnHel 
  Jcr4S00635.50  66 EFYTEFARRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPAKTSNESKPQRNRKSSRCGCQAYMRISKTTelgTPEWRVTGFANHHNHELL 159
                    6**************9998877356667999**************999999********************9988889**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-1866159IPR004330FAR1 DNA binding domain
PfamPF105516.5E-20282373IPR018289MULE transposase domain
PfamPF044342.8E-7557591IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.705560593IPR007527Zinc finger, SWIM-type
SMARTSM005754.2E-6568595IPR006564Zinc finger, PMZ-type
PfamPF085834.1E-14709778IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MRYMMSEEAG HMLMVYDEPS DQRSLSLDDT SSTEESPDET RLSLETTNDA IPYIGQRFAT  60
HDAAYEFYTE FARRCGFSIR RHRTEGKDGV GKGLTRRYFV CHRAGNTPAK TSNESKPQRN  120
RKSSRCGCQA YMRISKTTEL GTPEWRVTGF ANHHNHELLE PNQVRFLPAY RTISDTDKSR  180
ILMFAKTGIS VQQMMRLMEL EKCVEPGYLP FTEKDVRNLL QSFRKLDPED ESIDLLRMCR  240
NIKEKDPNFK FEYTLDSNNR LENIAWSYTS SIQSYEIFGD AVVFDTTHRL TAFDMPLGIW  300
VGVNNYGMPC FFGCVLLREE NLRSLSWALK AFLGFMNGKA PQTILTDQNM CLKEAIAMEM  360
PTTKHALCIW MIVAKFPSWF NAVLGERYNE WKADFHRLYN LESIEDFELG WRDMVNSFGL  420
HNNRHIANLY ALRMLWALPY LRSHFFAGMT AAGYSKSINA FIQRFLSAQT RLAHFVEQVA  480
VAVDFRDQAA EQQIMQQNLQ NICLKTGAPM ESHALSVLTP YAFSKLQEQL VLAAHYASFQ  540
MEDGFLVRHH TKLDGGRKVY WVPREGIISC SCHQFEFSGI LCRHALRVLS TGNCFQIPER  600
YLPIRWRRIS TSPAKLPHTS PNDHGERMQL LQNMVSTLVN EAAKSKERLE IATEQVSILL  660
SRIKEQPQKL AAEVSLSAST VPPAGATTCL LPEGRPVRTK IGLDSCSKMH PPLTLHRHPM  720
CAEIIEQFQK CHLDHPIGKF FGECTDLKIK LDRCFREEKA VKRKANFEQS KKLRERLQAL  780
RREAAEGSPE EKNFV
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066724.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A067LDA90.0A0A067LDA9_JATCU; Uncharacterized protein
STRINGcassava4.1_002947m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]