PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00613.10 | ||||||||
Common Name | JCGZ_21099, LOC105645242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | AP2 | ||||||||
Protein Properties | Length: 413aa MW: 45388.8 Da PI: 9.3354 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.7e-17 | 75 | 134 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Jcr4S00613.10 75 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 134 57*******************766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.1E-13 | 75 | 134 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-17 | 75 | 143 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-25 | 76 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-15 | 76 | 143 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.126 | 76 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-5 | 124 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MASSSSDPCL KPELGGGGGS SGGSAGGGGE SSEAVIANDQ LLLYRGLKKP KKERGCTAKE 60 RISKMPPCTA GKRSSIYRGV TRHRWTGRYE AHLWDKSTWN QNQNKKGKQV YLGAYDDEEA 120 AARAYDLAAL KYWGPGTLIN FPVTDYTRDL EEMQNVSREE YLASLRRKSS GFSRGISKYR 180 GLSRHGSYCI IAFKASSHAG RAADDPASES DYVGSLCFER KIDLTSYIKW WGSNKTRQAE 240 SISKSSEEAK HGYAEDVGGE LKTSEWAVQP TEPYQMPCLG MPIDGKKHKG SSFSALSILS 300 KSAAYKSLQE RASKKQENRT DNDENKNKNT NKMDYGKAVE KSTSHDNSNE RLGVALGMIG 360 GLSLQRNVYQ LTPFLPAPLL SNYNTIDPLV DPIHWTSLVP VLPTGLARNS EVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012086183.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-149 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A067JQ27 | 0.0 | A0A067JQ27_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_007488m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-130 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105645242 |
Publications ? help Back to Top | |||
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