PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00606.70
Common NameJCGZ_18493, LOC105641506
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 636aa    MW: 73765.6 Da    PI: 5.8644
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00606.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.3e-2471162190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                    ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHel 
  Jcr4S00606.70  71 EYYSNFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCDAKLYLTKEIvdgVAQWYVSQFSNVHNHELL 162
                    69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-2271162IPR004330FAR1 DNA binding domain
PfamPF105511.8E-9294350IPR018289MULE transposase domain
PfamPF044349.0E-8508543IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.928508544IPR007527Zinc finger, SWIM-type
SMARTSM005758.9E-4519546IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQTPVSSQLV KNETPSTSSS TDVVFTPYVG  60
QIFKTDDDAF EYYSNFARKN GFSIRKARST ESQNLGIYRR DFVCYRSGFN QPRKKANVEH  120
PRDRKSVRCG CDAKLYLTKE IVDGVAQWYV SQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  180
QERILLLSKA GFPVNRIVKV LEIEKGVQPG QLPFIEKDVR NFVRTCKKTV QENDAMLTEK  240
RENDTLELLE ACKAMVERDA DFAYDYTTDE NEKVENIAWS FGDSVRAYTV YGDVVVFDTT  300
YRSITYGLIL GVLFGMDNHG KAILFGCVLL QDESSHSFAW ALQYEDFKAE FDMLYHLESV  360
EDFEHQWNLL IARFGLASDK HIALLFSCRG SWSISYIRSF FLARTMTAEF SRTLDSFLKR  420
VLSGQTCLQV FFEQVGISAN FGNQNRDVMQ YMHIKTCMPI EEHARSVLTP YAFNVLQQEI  480
ILSMQYGIQE MADGSYLLRH YKKMDGEYLV YWMPAEEQIH CSCKEFERSG ILCRHSLRVL  540
SVKNYFQLPE KYFLLRWRQD HSLLPMDDQN AQSNSDECAE AFHSLAATLL TESLVSRERF  600
SYVHRELSGL VDHVRTMPPL MEEFSLNMAN NNISES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020537948.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A067KDJ50.0A0A067KDJ5_JATCU; Uncharacterized protein
STRINGcassava4.1_002824m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]