PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00593.110

Common Name

JCGZ_26442, LOC105648793

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

NF-YC

Protein Properties

Length: 198aa MW: 21311.7 Da PI: 4.7337

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00593.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	45.6	1.5e-14	41	78	1	35
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkaded 35 ql++fw++q ie+++dfknh+lPlarikki+kaded Jcr4S00593.110 41 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADED 78 89***998899*********************98 PP
2	NF-YC	44.4	3.7e-14	78	113	67	102
NF-YC 67 eenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 +enkrrtl+k+diaaa+trtdifdflvdivprde+k Jcr4S00593.110 78 DENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIK 113 69*******************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.6E-15	15	103	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.6E-8	55	78	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.4E-10	79	109	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MDANSQQAQS ASYPPQAPTT GAPAPPAPTP FHHLLQQQQQ QLQMFWSYQR QEIEQVNDFK 60 NHQLPLARIK KIMKADEDEN KRRTLQKNDI AAAITRTDIF DFLVDIVPRD EIKDEAGLGG 120 MVGATASGVP YYYPPMGQPT GAGPGGMMIG RPAVDPTGVY VQPPSQAWQS VWQTAAAAED 180 GSYGSGGSSG QGNLDGQG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	87	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012090689.1	1e-106	nuclear transcription factor Y subunit C-1 isoform X2
Refseq	XP_020540682.1	1e-106	nuclear transcription factor Y subunit C-1 isoform X1
Swissprot	Q9SMP0	6e-79	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A067JFC2	1e-104	A0A067JFC2_JATCU; Uncharacterized protein
STRING	XP_008464428.1	2e-96	(Cucumis melo)
STRING	XP_004138046.1	2e-96	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	3e-78	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Entrez Gene	105648793

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]