PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00586.70

Common Name

JCGZ_10194, LOC105634511

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

FAR1

Protein Properties

Length: 813aa MW: 94442 Da PI: 7.0242

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00586.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.4	2.4e-23	135	221	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++ + + r++r etrtgC a++++ ++ +gk++vt++e++HnHe++ Jcr4S00586.70 135 CYSRYAVLEGFSIRKDFVNKSRINGDVVSRRYTCYRQGYRPTKHVT--NVRKPRHETRTGCLAHMTIARQPNGKFRVTRFETQHNHEFV 221 7*************************************999877..99***********************************97 PP
2	FAR1	88.1	1.3e-27	269	357	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA vGFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+r+etr+gC a+l++++++d k++vt++e++HnHel+ Jcr4S00586.70 269 EFYNAYAGGVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRPRKETRIGCMAHLVISRQSDVKYRVTHFEEKHNHELV 357 6*****************************************999.9999**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.1E-22	135	221	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.3E-24	269	357	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-29	478	571	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	758	794	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.003	769	796	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 813 aa Download sequence Send to blast
MDSHEPDTAS YIQKEVSENN LQASPVVEIA VDKEHQGAQV SLFCVHKSLV VVESEHDCES 60 HGDGSPNDKS SEDCESPKSS NKSETSIEDE PESRSPNVPF IEESQNGAAI KDEEEVYLVP 120 KVGMEFETED HAYKCYSRYA VLEGFSIRKD FVNKSRINGD VVSRRYTCYR QGYRPTKHVT 180 NVRKPRHETR TGCLAHMTIA RQPNGKFRVT RFETQHNHEF VTASTAHILP SQKRLTFAAA 240 VEADLAKSSE MDGVPKLGMG FDSEGHAYEF YNAYAGGVGF SVRKDYVNRS KIDGAVASRR 300 FTCFREGFRQ KDKRDLNVKR PRKETRIGCM AHLVISRQSD VKYRVTHFEE KHNHELVAAC 360 RVRTLRSQKR LATAQVEGNE VDGSTMQTKL VSELLCNKIG DQDVHRYQCS DYNNKLPFRR 420 MRDMKEGEAE RLQQYFQSKQ LKNPSFFYSM QLDAEDRITN MFWADAKMMV DYSDFGDVVC 480 LDTTYRLYKD CRPFMAFVGV NHHKQMVVFG AAFLYDETIE SYKWLFQTFI EAMSGKKPQT 540 ILTDQDAVIA EAIYSMLPEM HHRICVWHMY QHALKQLNHL FVGSCSFIND LRSCFFEHEE 600 DGPFMNAWNQ MLDAYGLREN EWLHHMFKER EKWAIPYARQ IFCADITTAQ LHADLTASLK 660 RYLKFDFDVL SFSKHLGKML NDWHYKELEA NYDMSRRLPR LMGDVILLKQ ARDIYTPKIF 720 ELFQQEYETS LNILINHWTE SGSMFEYKAS IYGQEQEYTV GFNSSKEMVA CNCMKFEFMG 780 VLCSHALKVL DFRNIKLLPS QYILKRWTRD ARV

Sequence ? help Back to Top

Protein Sequence Length: 813 aa Download sequence Send to blast

MDSHEPDTAS YIQKEVSENN LQASPVVEIA VDKEHQGAQV SLFCVHKSLV VVESEHDCES  60
HGDGSPNDKS SEDCESPKSS NKSETSIEDE PESRSPNVPF IEESQNGAAI KDEEEVYLVP  120
KVGMEFETED HAYKCYSRYA VLEGFSIRKD FVNKSRINGD VVSRRYTCYR QGYRPTKHVT  180
NVRKPRHETR TGCLAHMTIA RQPNGKFRVT RFETQHNHEF VTASTAHILP SQKRLTFAAA  240
VEADLAKSSE MDGVPKLGMG FDSEGHAYEF YNAYAGGVGF SVRKDYVNRS KIDGAVASRR  300
FTCFREGFRQ KDKRDLNVKR PRKETRIGCM AHLVISRQSD VKYRVTHFEE KHNHELVAAC  360
RVRTLRSQKR LATAQVEGNE VDGSTMQTKL VSELLCNKIG DQDVHRYQCS DYNNKLPFRR  420
MRDMKEGEAE RLQQYFQSKQ LKNPSFFYSM QLDAEDRITN MFWADAKMMV DYSDFGDVVC  480
LDTTYRLYKD CRPFMAFVGV NHHKQMVVFG AAFLYDETIE SYKWLFQTFI EAMSGKKPQT  540
ILTDQDAVIA EAIYSMLPEM HHRICVWHMY QHALKQLNHL FVGSCSFIND LRSCFFEHEE  600
DGPFMNAWNQ MLDAYGLREN EWLHHMFKER EKWAIPYARQ IFCADITTAQ LHADLTASLK  660
RYLKFDFDVL SFSKHLGKML NDWHYKELEA NYDMSRRLPR LMGDVILLKQ ARDIYTPKIF  720
ELFQQEYETS LNILINHWTE SGSMFEYKAS IYGQEQEYTV GFNSSKEMVA CNCMKFEFMG  780
VLCSHALKVL DFRNIKLLPS QYILKRWTRD ARV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012072770.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A067LPB4	0.0	A0A067LPB4_JATCU; Uncharacterized protein
STRING	EOY02643	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-116	FAR1-related sequence 5

Link Out ? help Back to Top
Entrez Gene	105634511

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]