PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00586.10

Common Name

JCGZ_10188

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

MYB

Protein Properties

Length: 274aa MW: 31317 Da PI: 5.6519

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00586.10	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41	4.4e-13	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l + + G ++W+ +++ g+ R++k+c++rw +yl Jcr4S00586.10 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	54.3	3.2e-17	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++ Jcr4S00586.10 67 RGGFTEVEENQIIQLHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 788*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-21	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.517	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.91E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	6.3E-6	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-11	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.24E-4	16	61	No hit	No description
PROSITE profile	PS51294	25.231	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-25	65	117	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	9.3E-16	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	8.27E-12	70	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MGRQPCCDKV GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY 60 LRPDLKRGGF TEVEENQIIQ LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKRRLKQLG 120 IDPVTHKSIE QAEIDKISVN DETSSKISNL PQLEDQSKND DEKTSGKKEL VSSMDETCDD 180 DLLKNYEMLC GSLDLGSWIN QLETNNNNNN NNNNNMSYSS SMSIEESNNP SIGEYSSVQD 240 GCSVVLQQWV DSVDSILSWD DFNHLGDDIF SLGK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-28	12	116	5	108	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00510	DAP	Transfer from AT5G14340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM034737	0.0	KM034737.1 Jatropha curcas clone JcMYB118 MYB family protein gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012071273.2	0.0	myb-related protein 315
TrEMBL	A0A067LG98	0.0	A0A067LG98_JATCU; MYB family protein
STRING	cassava4.1_031140m	1e-124	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6625	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	8e-88	myb domain protein 40

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]