PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00584.140
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 313aa    MW: 33372.3 Da    PI: 5.0783
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00584.140genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.7e-17224259134
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C++Cgt++  Tp++Rrgp g++tLCnaCGl+++ kg
  Jcr4S00584.140 224 CTHCGTSSksTPMMRRGPAGPRTLCNACGLKWANKG 259
                     ********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.0E-15151193IPR010402CCT domain
PROSITE profilePS5101713.265151193IPR010402CCT domain
SMARTSM004015.5E-10218275IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-12222271No hitNo description
Gene3DG3DSA:3.30.50.101.7E-15223265IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.117224266IPR000679Zinc finger, GATA-type
CDDcd002021.47E-15224266No hitNo description
PfamPF003201.0E-14224259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MPNSNRQASM YTAEHMEIHG QLEEDDEDMA GGGEESIDNP NIHYENGAGN GGGMEDVPPS  60
GIRGEVYVFD AVSPDKAIDF VNSAVFCGSM LVQSVDAWLN FYGVLYACMV QAVLLLLGGY  120
EIPSGIPATG AVPLNPRGPS DLSGRSIQPQ RAASLRRFRE KRKERCFDKK IRYSVRKEVA  180
LRMQRKKGQF TSAKANSDEA GSASSGWSAT QGSGLDESML ETLCTHCGTS SKSTPMMRRG  240
PAGPRTLCNA CGLKWANKGI LRDLSKVANM AGQGPPAKPT EQSEGEANDS DAVTLPADIV  300
SSNGDNSALT AET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155163RRFREKRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081379.10.0GATA transcription factor 28 isoform X1
TrEMBLA0A067K1921e-173A0A067K192_JATCU; Uncharacterized protein
STRINGcassava4.1_012906m1e-144(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-61ZIM-like 1