PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00579.30

Common Name

JCGZ_11777

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bZIP

Protein Properties

Length: 94aa MW: 11087.7 Da PI: 8.8106

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00579.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.8	9.7e-13	1	43	10	52
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 +++NRe+ArrsR RKk++ieeL+ v L++ N++L +++ +l Jcr4S00579.30 1 MISNRESARRSRMRKKKQIEELQCQVNHLQTMNHQLSEKVIHL 43 689**********************************998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	9.461	1	57	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.9E-10	1	41	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	7.4E-12	1	50	No hit	No description
CDD	cd14702	4.96E-10	1	48	No hit	No description
SMART	SM00338	2.8E-8	1	56	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-11	1	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 94 aa Download sequence Send to blast
MISNRESARR SRMRKKKQIE ELQCQVNHLQ TMNHQLSEKV IHLLESNHQI LEENSQLKEK 60 VSSLQIVLSD LLTPMRNIEE SICNTNHLRR EASN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021614999.1	4e-51	bZIP transcription factor 11-like
Swissprot	Q9FMC2	4e-16	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A067K596	1e-57	A0A067K596_JATCU; Uncharacterized protein
STRING	cassava4.1_026149m	2e-50	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13044	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60830.1	8e-40	basic leucine-zipper 70

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]