PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00578.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 456aa    MW: 50590.5 Da    PI: 5.0831
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00578.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.82e-13257302454
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    +h + Er+RR++i+++++ Lr l+P++      K++ a+++  A++YIk+L
  Jcr4S00578.30 257 KHFATERQRRQHIKDKYDDLRNLVPNP-----SKNDRASVVGDAINYIKEL 302
                    699***********************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.792253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15255316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-11257302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-13257311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.30E-12257306No hitNo description
SMARTSM003536.9E-11259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MYEETDCFDP NSIVEGPDGE LCQVLQPPPP PPPLMAGSST TNSHNSLEEN LKLSADEICH  60
HSLNNPHLEE DASAATAAVM EIQLQNQQMG LNTHLIHEPS NHLAFTSSSS LPDSSYTPPP  120
DLLNLFHLPR SSLLPNSSIS FTNPNHTTPL GFVGDLPMTD TASASSILYD PLFHLNLPPQ  180
PPLFRDLFQS LPPHGYSLPG SRGSSLFGGV GDDHVEGSGG VNLYQEGDGE QQFDNGVLDF  240
TWDMACMGNG RQGGNIKHFA TERQRRQHIK DKYDDLRNLV PNPSKNDRAS VVGDAINYIK  300
ELLRTVNELK ILVEKKRCAR ERGKRQKIEE DSIGNVHESK IVDDPDQSFN NGSLRSFWLQ  360
RKSKDTEVDV RIIDDEVTIK LVQRKKINCL LFVSKVLDEL QLDLHHVAGG HVGDYYSFLF  420
NSKIYEGSSV YASAIANKLI EVVDRQYAST PSTSCY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065727.10.0transcription factor bHLH91
RefseqXP_020532799.10.0transcription factor bHLH91
TrEMBLA0A067L5790.0A0A067L579_JATCU; Uncharacterized protein
STRINGXP_002534354.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-98bHLH family protein