PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00571.10
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 322aa    MW: 37104.9 Da    PI: 5.7605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00571.10genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.41.8e-191764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd++l ++++ +G ++WktIa + g++R++k+c++rw++yl
    Jcr4S00571.10 17 RGAWTVEEDQKLSQYIEVHGAKRWKTIATKAGLNRCGKSCRLRWLNYL 64
                     89********************************************97 PP
2Myb_DNA-binding50.16.4e-1670115148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
    Jcr4S00571.10  70 RGNISDDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 115
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.8891268IPR017930Myb domain
SuperFamilySSF466893.08E-2916111IPR009057Homeodomain-like
SMARTSM007174.9E-161666IPR001005SANT/Myb domain
PfamPF002491.6E-171764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-251871IPR009057Homeodomain-like
CDDcd001672.80E-111964No hitNo description
PROSITE profilePS5129421.40469119IPR017930Myb domain
SMARTSM007178.8E-1669117IPR001005SANT/Myb domain
PfamPF002493.0E-1470115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2472119IPR009057Homeodomain-like
CDDcd001673.62E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009957Biological Processepidermal cell fate specification
GO:0010090Biological Processtrichome morphogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0048629Biological Processtrichome patterning
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAPKNSGESS SKKVKNRGAW TVEEDQKLSQ YIEVHGAKRW KTIATKAGLN RCGKSCRLRW  60
LNYLRPNIKR GNISDDEEDL ILRLHKLLGN RWSLIAGRLP GRTDNEIKNY WNSHLRKKIS  120
LEKKPESPMP QENSQEKTCD TNQVMQEGIT GAANRDISFD VNELFGYSIE GSHGLEWVDK  180
FLELDVEDPW LTENSKQTQD RCCLPTTPNN LESETPELEE TLVPMQQKET EKIAVPDALR  240
LQALGEQSIL YDQNIESIQF NMQVQLRKVE EAQSLQAKKM DDFSQQMKQI MEMMHSLHQG  300
KETLNSAMEN DARLLRFIDT LN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-291611926128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346770.0KM034677.1 Jatropha curcas clone JcMYB057 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012070024.10.0myb-related protein 330 isoform X2
SwissprotQ388503e-52MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A097HUN20.0A0A097HUN2_JATCU; MYB family protein
STRINGcassava4.1_028721m6e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-54myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]