PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00570.70
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 437aa    MW: 48775.7 Da    PI: 4.3998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00570.70genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.2e-194594255
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Jcr4S00570.70 45 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 94
                   789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.86E-3244101No hitNo description
SuperFamilySSF541712.88E-1945103IPR016177DNA-binding domain
PfamPF008471.1E-134594IPR001471AP2/ERF domain
PROSITE profilePS5103219.55945102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2745101IPR001471AP2/ERF domain
SMARTSM003806.6E-3745108IPR001471AP2/ERF domain
PRINTSPR003676.7E-84657IPR001471AP2/ERF domain
PRINTSPR003676.7E-86884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGRKRKVGQE NLEDKNNSCS DQGTMAWDEM VKEAAIGGVR RARKRFVGVR QRPSGRWVAE  60
IKDTIQKIRV WLGTFDTAEE AARAYDEAAC LLRGANTRTN FWPSSPSSSA TTSALPSKIT  120
NLLLQRLKAR NSNNNSGNCP SPPLSTSTMV ASSLASVINK KKQEKQQLLE GQVVTDFSAD  180
HTQFTDFLIN GDPPQDFDHY ISNNDHMVGS CSSVEFGSCL TDEREEEDRA LDFDCNWITD  240
DHITQSFCSG DVNNTNFHEE DGEVDMGGLD FQFIDNVDQS SLYCSPFDIF EEMEEPVEPE  300
TCYGDEPSML RAAMKRMKYE RKFSASLYAF NGIPECLRLK LGSGERSVSQ LTNLRNACNK  360
KKEEERKVLE EEEEEQDNIS EAMEKKQEEN PQSSIELESS SSSSASSSSS SSSSSLSNDG  420
ELSLWSSLDL PPICYVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1338101771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1558882e-39AC155888.2 Medicago truncatula chromosome 7 clone mth2-30a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020538870.10.0uncharacterized protein LOC105644101
TrEMBLA0A067K5W10.0A0A067K5W1_JATCU; Uncharacterized protein
STRINGcassava4.1_008867m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11