PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00560.30

Common Name

JCGZ_07620

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Nin-like

Protein Properties

Length: 507aa MW: 57513 Da PI: 5.0698

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00560.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.7	4.2e-22	241	287	2	48
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 + +++l+d ++yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRk Jcr4S00560.30 241 TGKLTLKDFEAYFHLPIEEAARRINLCPTVVKKICRRDGMNRWPHRK 287 5689******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.504	231	311	IPR003035	RWP-RK domain
Pfam	PF02042	4.6E-19	243	287	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MADPRSVVPY HDPHDGPIDY DYLSFILDSN PNLVNLSPVN EPNSIDLSSD NNVTAPDHHF 60 EDPTIWNISN ESNNMGVQPQ IEGPSQSQNV TEAENSQRPS CLDGGMSLPV WPPPITPFSC 120 TYCQVLREIV HTDGICTTKL EIHGRLGVIC HAIFQSRNSV QAVSSVPQYH MLDFCKKSID 180 KVKQFLQQYC DDKKQAGYVI LQDPLSVFYE ALCVGIEWDE TLNNDDFFDP SPSFSVQRER 240 TGKLTLKDFE AYFHLPIEEA ARRINLCPTV VKKICRRDGM NRWPHRKQCG GKDACSSRDP 300 KAPRRNIQPL CWRRVKQEAP QEWDENMPLP EDIIEGFAED DDDELFMPAK ANSELSSQLG 360 KKSIIAKKDI QQERSDIYWK MKMDNYLPDR QSSVISSILF FPMQGEYCID ATTARCMAWF 420 SAAVSSGVPL IFVNIQTEQT ITSVPLKHEL KEKAQCTGKE PIWGGQNNHN ASVHIMQGIR 480 LWFLPGIAQV VIEMTLEPGE ERIGNRH

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MADPRSVVPY HDPHDGPIDY DYLSFILDSN PNLVNLSPVN EPNSIDLSSD NNVTAPDHHF  60
EDPTIWNISN ESNNMGVQPQ IEGPSQSQNV TEAENSQRPS CLDGGMSLPV WPPPITPFSC  120
TYCQVLREIV HTDGICTTKL EIHGRLGVIC HAIFQSRNSV QAVSSVPQYH MLDFCKKSID  180
KVKQFLQQYC DDKKQAGYVI LQDPLSVFYE ALCVGIEWDE TLNNDDFFDP SPSFSVQRER  240
TGKLTLKDFE AYFHLPIEEA ARRINLCPTV VKKICRRDGM NRWPHRKQCG GKDACSSRDP  300
KAPRRNIQPL CWRRVKQEAP QEWDENMPLP EDIIEGFAED DDDELFMPAK ANSELSSQLG  360
KKSIIAKKDI QQERSDIYWK MKMDNYLPDR QSSVISSILF FPMQGEYCID ATTARCMAWF  420
SAAVSSGVPL IFVNIQTEQT ITSVPLKHEL KEKAQCTGKE PIWGGQNNHN ASVHIMQGIR  480
LWFLPGIAQV VIEMTLEPGE ERIGNRH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A067KQE7	0.0	A0A067KQE7_JATCU; Uncharacterized protein
STRING	XP_006474671.1	2e-94	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	7e-09	Nin-like family protein

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]