PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00524.90
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 282aa    MW: 30571 Da    PI: 7.7533
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00524.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.61.5e-17210246135
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++Cgt++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Jcr4S00524.90 210 CTHCGTSSklTPMMRRGPSGPRSLCNACGLFWANRGT 246
                    *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.04274109IPR010399Tify domain
SMARTSM009791.0E-974109IPR010399Tify domain
PfamPF062005.2E-1278108IPR010399Tify domain
PfamPF062034.1E-16142184IPR010402CCT domain
PROSITE profilePS5101712.65142184IPR010402CCT domain
PROSITE profilePS5011411.306204265IPR000679Zinc finger, GATA-type
SMARTSM004013.4E-15204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-12207255No hitNo description
Gene3DG3DSA:3.30.50.103.6E-16208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.17E-15209255No hitNo description
PfamPF003203.2E-15210246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MYTHSHSQSM NVHHQIAATA GPAGDDDDGA AVDSIDHHHI RYEDGNATGV VEEVSPDSVY  60
VPSSGAGSEL AIQRGDVSSQ LTLTFRGQVY VFDAVTPDKV QAVLLLLGGC ELTSGPHGLD  120
VAAQNQRGAV VDYPGRCTQP QRAASLNRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ  180
FTSSKKSDGT YGWGGGQDSG QDDGLQETSC THCGTSSKLT PMMRRGPSGP RSLCNACGLF  240
WANRGTLRDL SKKTQEHSLT PVEQRIEFPS CLARAATALC ND
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068039.10.0GATA transcription factor 25
SwissprotQ9LRH62e-93GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A067KZ880.0A0A067KZ88_JATCU; Uncharacterized protein
STRINGXP_002527370.11e-160(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.21e-84GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]