PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00524.100
Common NameJCGZ_15905, LOC105630725
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 357aa    MW: 38790.9 Da    PI: 4.5225
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00524.100genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.74.9e-16208244135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  Jcr4S00524.100 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244
                     *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94268103IPR010399Tify domain
SMARTSM009794.2E-768103IPR010399Tify domain
PfamPF062003.6E-1071102IPR010399Tify domain
PfamPF062031.0E-14136177IPR010402CCT domain
PROSITE profilePS5101712.65136178IPR010402CCT domain
PROSITE profilePS501148.524202250IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-8202257IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.42E-11204252No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14206249IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.95E-16207251No hitNo description
PROSITE patternPS003440208235IPR000679Zinc finger, GATA-type
PfamPF003206.9E-14208244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYEEHVGE PIRIEDDDGE YDDGDAMDDV DEAHMNSGVN VAEHHAGVGV  60
GGGAGLVMAS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDIPTAV PTIEVPYEQN  120
NRVIGDTPKR SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR KNGQFASLKE  180
SSGGSNWDSA QSCLQDGTPR TETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA  240
NKGTLRDLSK GGRNVSIDQI EPETPVDIKP SIMEGEYSGN QDEHGTPEDP SKAVTEGSNN  300
PSVNPVVVLQ EATEDLTGTL PMGVVHSSAD DDDDEQGSLV ELANPSDTEL DIPSNFE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068046.10.0GATA transcription factor 24 isoform X2
SwissprotQ8GXL78e-73GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067L2M70.0A0A067L2M7_JATCU; Uncharacterized protein
STRINGXP_002527369.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.11e-74ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]