PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00523.70

Common Name

JCGZ_20682, LOC105645895

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

TCP

Protein Properties

Length: 386aa MW: 40075.8 Da PI: 5.1541

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00523.70	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	50.2	1e-15	103	171	35	101
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskksq 101 L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ ++ + +s++ s+++ ++++ k+k+++ Jcr4S00523.70 103 LTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsVGGTLKIPTSTNDSNNSLTETTkKRKRPS 171 9******************************88888555433333333333333333334332222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	7.4E-11	103	158	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MDPDDEGGTS DLSTSAGDVK EDNINRNNNY TDNGVSKIST IDETEAFQLM PLKEEPIDSD 60 PPSDPDRRTH PHGPQHPPPQ PSAIGVVPMA MQMPMSIPMP MPLTRELGHK SDGETVRWLL 120 EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TSTNDSNNSL TETTKKRKRP SNSEFCDISE 180 VTVPVTQSSG LAPVTPATPI AATATPQGLV PVWAVSSGGM MVPANAFWMI PQAATPAGTS 240 AFAAAAAGVS GPSTHQQQPQ IWALSPSIAP VFNVAAARPI SSFVAAAATN GNNNQTTGVN 300 IVNIPSGVEV RAPPTVVTST SIGAKVAKKS TMAPSVSSTN TGSGSSGNIG GKAQMLRDFS 360 LEIYDKQELQ LMGRSASNQQ HQGSKS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MDPDDEGGTS DLSTSAGDVK EDNINRNNNY TDNGVSKIST IDETEAFQLM PLKEEPIDSD  60
PPSDPDRRTH PHGPQHPPPQ PSAIGVVPMA MQMPMSIPMP MPLTRELGHK SDGETVRWLL  120
EHAEQAIIEA TGTGTVPAIA VSVGGTLKIP TSTNDSNNSL TETTKKRKRP SNSEFCDISE  180
VTVPVTQSSG LAPVTPATPI AATATPQGLV PVWAVSSGGM MVPANAFWMI PQAATPAGTS  240
AFAAAAAGVS GPSTHQQQPQ IWALSPSIAP VFNVAAARPI SSFVAAAATN GNNNQTTGVN  300
IVNIPSGVEV RAPPTVVTST SIGAKVAKKS TMAPSVSSTN TGSGSSGNIG GKAQMLRDFS  360
LEIYDKQELQ LMGRSASNQQ HQGSKS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012087026.1	0.0	transcription factor TCP9
TrEMBL	A0A067JNG4	0.0	A0A067JNG4_JATCU; Uncharacterized protein
STRING	POPTR_0001s08590.1	1e-150	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2118	30	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-39	TCP family protein

Link Out ? help Back to Top
Entrez Gene	105645895

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]