PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00517.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 193aa MW: 21473.1 Da PI: 8.5995 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.1 | 2.4e-28 | 125 | 174 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRr g+lKKA ELS+LCdaev viifsstgkly+y+s Jcr4S00517.40 125 RIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGVIIFSSTGKLYDYAS 174 8***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.595 | 116 | 176 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-40 | 116 | 175 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-27 | 117 | 176 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.17E-37 | 117 | 175 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 118 | 172 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 118 | 138 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 125 | 172 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 138 | 153 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-28 | 153 | 174 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MGSRDKDQMT SHHQPLLSRL VVRPLVIDRG DGGVGDSDGG NDYEPGEVHR DPPPYSCQDR 60 YSDDPRWRSC GSGKDTRGGD VDGEGSDSGS SACIGKKLIK ERKELEFLIE QGKEKMGRGK 120 IVIRRIDNST SRQVTFSKRR SGLLKKAREL SILCDAEVGV IIFSSTGKLY DYASTRSDFY 180 LAFSSYIHKF MVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-20 | 116 | 186 | 1 | 72 | MEF2C |
5f28_B | 2e-20 | 116 | 186 | 1 | 72 | MEF2C |
5f28_C | 2e-20 | 116 | 186 | 1 | 72 | MEF2C |
5f28_D | 2e-20 | 116 | 186 | 1 | 72 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067KVR8 | 1e-104 | A0A067KVR8_JATCU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14210.1 | 3e-35 | AGAMOUS-like 44 |