PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00501.30
Common NameJCGZ_07274, LOC105637750
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 378aa    MW: 41671.5 Da    PI: 8.0911
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00501.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000512332711255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Jcr4S00501.30 233 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 271
                    6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.611221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-6231275No hitNo description
SuperFamilySSF474593.01E-10231282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-7235278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MNRGLLQSSP PMQQIMAGNP NWWNINNMRP PITHQQTLTS PFLPPPTLFP HYTPSPPSSS  60
SSTSSSSSSS SSSSLTIPSW HDNQDQLPES WSQLLMGGLM EEDKGNMGHF QVRKFENWEE  120
QMLHHQASSG SAIVNVKQEN CPSSYVYGPV NDDFQTTKPS WSLMIPPPAS SPKSCVTSFS  180
SNMLVFFKPN KRSMVAGHPP PDRSSECNST ATGGALKKAR VQPSSTQSTF KVRKEKLGDR  240
ITALHQLVSP FGKTDTASVL LEAIGYIRFL QNQIEALSSP YLGSGSSNMR QQQQQQHQHQ  300
HQQSVQGERN CIFPEDPGQL LNDNCIKRKG ASDPQHYNEE QKKDLRSRGL CLVPVSCTLQ  360
VGSDNGADYW APALGGGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012076734.10.0transcription factor bHLH68
SwissprotQ8S3D11e-104BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A067KFH30.0A0A067KFH3_JATCU; Uncharacterized protein
STRINGcassava4.1_010267m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.17e-93bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]