PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00499.50
Common NameJCGZ_25047, LOC105646628
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 301aa    MW: 34180.3 Da    PI: 8.943
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00499.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-102873346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++  +   +W+++a+ ++ g+t  +++ +++ 
    Jcr4S00499.50 28 KWTPEENKRFENALALYDRDdpdRWHKVASVIP-GKTVGDIIKHYRE 73
                     8*****************99*************.***********96 PP

2Myb_DNA-binding46.96.5e-15138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
    Jcr4S00499.50 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182
                      8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-52374IPR009057Homeodomain-like
PROSITE profilePS5129310.8192479IPR017884SANT domain
SMARTSM007178.9E-112577IPR001005SANT/Myb domain
SuperFamilySSF466891.31E-112781IPR009057Homeodomain-like
CDDcd001673.90E-92874No hitNo description
PfamPF002499.8E-92874IPR001005SANT/Myb domain
PROSITE profilePS5129419.898131187IPR017930Myb domain
SuperFamilySSF466898.97E-18132187IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-18134186IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.3E-13135181IPR009057Homeodomain-like
SMARTSM007173.9E-13135185IPR001005SANT/Myb domain
PfamPF002491.7E-12138182IPR001005SANT/Myb domain
CDDcd001676.95E-11138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNQGIEILSP GSYFQNSNWL FPESRATKWT PEENKRFENA LALYDRDDPD RWHKVASVIP  60
GKTVGDIIKH YRELEEDVSD IEAGLIPIPG YSSDSFTLEW VNNHIDHSFG EFKHFYTPGG  120
KRTTATRPCE QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ  180
KYFIRQSTGG KDKRRSSIHD ITTVNLPDTK SPSPDHKKSL SPDHSTTTSL NSQAQPKMSA  240
MAKGFLDWKP QNDAGTAAAN GNLLMPPFCG MPKLQEQNLL RGTLPGYQLG PYNLIFQMQP  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1529931175RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087903.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-107DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067JNT70.0A0A067JNT7_JATCU; Uncharacterized protein
STRINGXP_002534707.11e-178(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-119MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]