PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00499.50 | ||||||||
Common Name | JCGZ_25047, LOC105646628 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 301aa MW: 34180.3 Da PI: 8.943 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 28 | 73 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ +a +++ + +W+++a+ ++ g+t +++ +++ Jcr4S00499.50 28 KWTPEENKRFENALALYDRDdpdRWHKVASVIP-GKTVGDIIKHYRE 73 8*****************99*************.***********96 PP | |||||||
2 | Myb_DNA-binding | 46.9 | 6.5e-15 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky Jcr4S00499.50 138 PWTEEEHRQFLMGLQKYGKGDWRNISRNFVTTRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-5 | 23 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.819 | 24 | 79 | IPR017884 | SANT domain |
SMART | SM00717 | 8.9E-11 | 25 | 77 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.31E-11 | 27 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.90E-9 | 28 | 74 | No hit | No description |
Pfam | PF00249 | 9.8E-9 | 28 | 74 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.898 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.97E-18 | 132 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.5E-18 | 134 | 186 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.3E-13 | 135 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-13 | 135 | 185 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-12 | 138 | 182 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.95E-11 | 138 | 183 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNQGIEILSP GSYFQNSNWL FPESRATKWT PEENKRFENA LALYDRDDPD RWHKVASVIP 60 GKTVGDIIKH YRELEEDVSD IEAGLIPIPG YSSDSFTLEW VNNHIDHSFG EFKHFYTPGG 120 KRTTATRPCE QERKKGVPWT EEEHRQFLMG LQKYGKGDWR NISRNFVTTR TPTQVASHAQ 180 KYFIRQSTGG KDKRRSSIHD ITTVNLPDTK SPSPDHKKSL SPDHSTTTSL NSQAQPKMSA 240 MAKGFLDWKP QNDAGTAAAN GNLLMPPFCG MPKLQEQNLL RGTLPGYQLG PYNLIFQMQP 300 Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-15 | 29 | 93 | 11 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012087903.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 1e-107 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A067JNT7 | 0.0 | A0A067JNT7_JATCU; Uncharacterized protein | ||||
STRING | XP_002534707.1 | 1e-178 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF466 | 34 | 162 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-119 | MYB family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105646628 |
Publications ? help Back to Top | |||
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