PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00483.60 | ||||||||
Common Name | JCGZ_25732, LOC105646881 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 194aa MW: 22489.4 Da PI: 8.7989 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.3 | 2e-16 | 20 | 72 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++ ++q+++Le+ F+ n++++a+ + +LA +lgL+ qV +W+qNrRa++k Jcr4S00483.60 20 KKRLARDQIQILESNFYPNQKLNADLKLDLAYQLGLPPIQVAIWYQNRRARHK 72 566889*********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 87.7 | 1.5e-28 | 19 | 110 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++q+++LE++F ++kL+ + K +la +Lgl p qva+W+qnrRAR+k+ E++ye +++++ ++ +e+ rL+kev L+ el++ Jcr4S00483.60 19 SKKRLARDQIQILESNFYPNQKLNADLKLDLAYQLGLPPIQVAIWYQNRRARHKMEAKEHEYENIQEQLRNVLAEKIRLQKEVLMLKCELDK 110 59************************************************************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.03E-15 | 7 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.868 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-12 | 16 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.28E-10 | 17 | 72 | No hit | No description |
Pfam | PF00046 | 4.7E-14 | 20 | 72 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-15 | 22 | 81 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MNSHFHQSQT LSHHPTKASK KRLARDQIQI LESNFYPNQK LNADLKLDLA YQLGLPPIQV 60 AIWYQNRRAR HKMEAKEHEY ENIQEQLRNV LAEKIRLQKE VLMLKCELDK AQEMLVLASN 120 RSTTTLLSGS TSDDRRANSQ SSENTTYSWL ATCKFPEEEL YTCLTFPVNM RQNNHGLLAK 180 SVNPNNDTNS DFKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012088207.1 | 1e-144 | homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | A0A067JVR1 | 1e-143 | A0A067JVR1_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0017s04820.1 | 2e-54 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16535 | 5 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 9e-23 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Entrez Gene | 105646881 |
Publications ? help Back to Top | |||
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