PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00462.30

Common Name

JCGZ_13119, LOC105639096

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

bHLH

Protein Properties

Length: 387aa MW: 42402.2 Da PI: 5.4944

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00462.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.5	5.6e-09	202	249	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Jcr4S00462.30 202 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 249 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-17	196	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.05E-11	196	253	No hit	No description
PROSITE profile	PS50888	15.663	198	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-17	198	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.7E-6	202	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.5E-10	204	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEKEFLFTSK EPNSTTAAAA TWNSCNFGIE IQPNCFLNPN WENSMDQSDP FESALSSIVS 60 SPVTTSIPTR NHPSLAQFPA DPGFVERAAK FSFFGGALNE QMKGNGFKVD GNSNSDNADF 120 GDSREESSLS EQIPGGELRM KSQNNDSNSN ARKRKAIPKG KAKETPPPSE AKVVVAEKEE 180 QSAKRSKSEE GNGARRGQAT DSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE 240 IINYVQSLQR QVEFLSMKLA TVNPRMDFNM EAILSKDIFQ SRGSMSHSVH PLDSSAALGL 300 PYGYQSQQGV ALPNSSGIMS SNAETQFSMN PLNVSALRLN QSVQLPPLDG FGDGTCQVSP 360 FWEDDLQSFV QMGFSQNQHA GHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEKEFLFTSK EPNSTTAAAA TWNSCNFGIE IQPNCFLNPN WENSMDQSDP FESALSSIVS  60
SPVTTSIPTR NHPSLAQFPA DPGFVERAAK FSFFGGALNE QMKGNGFKVD GNSNSDNADF  120
GDSREESSLS EQIPGGELRM KSQNNDSNSN ARKRKAIPKG KAKETPPPSE AKVVVAEKEE  180
QSAKRSKSEE GNGARRGQAT DSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE  240
IINYVQSLQR QVEFLSMKLA TVNPRMDFNM EAILSKDIFQ SRGSMSHSVH PLDSSAALGL  300
PYGYQSQQGV ALPNSSGIMS SNAETQFSMN PLNVSALRLN QSVQLPPLDG FGDGTCQVSP  360
FWEDDLQSFV QMGFSQNQHA GHMKVEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012078428.1	0.0	transcription factor bHLH78 isoform X1
TrEMBL	A0A067KL80	0.0	A0A067KL80_JATCU; Uncharacterized protein
STRING	XP_002516384.1	1e-136	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2530	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-70	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	105639096

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]