PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00458.60
Common NameJCGZ_06318
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family bHLH
Protein Properties Length: 343aa    MW: 37566.7 Da    PI: 6.8912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00458.60genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000442082461255
                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Jcr4S00458.60 208 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 246
                    6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.439196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-7206254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-10206258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-5206250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMAGNPSRWS MHPPSQQTSA AFFPSQYVFG SSSSSSSLPF NSLPDNQELP QSWSQLLLGG  60
LTGDQEEDRY GVGVGHFKPK KLENWEDQIL NPSYSRIPQV VADVKQEVAH NSNLYGHGDD  120
EFHHHQLTTT TTTTATCWSQ QQVMPVSSPR SCVTTLSSNI LDFSYNKPPD IRNQHPDQSS  180
ECNSTATGGV CKKPRVQPSS SQPPLKVRKE KLGDRITALH QLVSPFGKTD TASVLLEAIG  240
YIRFLQGQIE ALSSPYLTTA SSNIRNQHSV QGERNCVFPE DPGQLLNDIC LKRKGGPNQQ  300
DNSQDKPKDL KSRGLCLVPV SCTQHVGSDN GADYWAPAIG GGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073390.10.0transcription factor bHLH68
SwissprotQ8S3D17e-79BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A067KME30.0A0A067KME3_JATCU; Uncharacterized protein
STRINGXP_002516005.11e-170(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.14e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  3. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]