PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00455.20

Common Name

JCGZ_25593, LOC105646752

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

M-type_MADS

Protein Properties

Length: 64aa MW: 7393.69 Da PI: 10.9428

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00455.20	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	104.5	3.7e-33	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Jcr4S00455.20 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.529	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.1E-40	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.16E-36	2	61	No hit	No description
SuperFamily	SSF55455	2.62E-30	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.5E-34	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 64 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSSI 60 SKFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-20	1	61	1	61	MEF2C
5f28_B	2e-20	1	61	1	61	MEF2C
5f28_C	2e-20	1	61	1	61	MEF2C
5f28_D	2e-20	1	61	1	61	MEF2C
6byy_A	2e-20	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-20	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-20	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-20	1	59	1	59	MEF2 CHIMERA
6bz1_A	1e-20	1	59	1	59	MEF2 CHIMERA
6bz1_B	1e-20	1	59	1	59	MEF2 CHIMERA
6bz1_C	1e-20	1	59	1	59	MEF2 CHIMERA
6bz1_D	1e-20	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with J2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF185574	1e-63	AF185574.2 Populus tremuloides transcription factor MAGL4 mRNA, complete cds.
GenBank	DQ789398	1e-63	DQ789398.1 Populus tomentosa MADS4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002525916.2	1e-35	developmental protein SEPALLATA 1
Refseq	XP_021690779.1	1e-35	developmental protein SEPALLATA 1-like
Swissprot	Q39685	5e-35	CMB1_DIACA; MADS-box protein CMB1
Swissprot	Q7Y040	5e-35	EJ2_SOLLC; MADS-box protein EJ2
TrEMBL	A0A2C9WDL3	5e-36	A0A2C9WDL3_MANES; Uncharacterized protein
STRING	cassava4.1_024706m	2e-36	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	5e-37	MIKC_MADS family protein

Link Out ? help Back to Top
Entrez Gene	105646752

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]