PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00447.30

Common Name

JCGZ_06259, LOC105634968

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

Trihelix

Protein Properties

Length: 402aa MW: 46252.4 Da PI: 4.3074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00447.30	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.1	1.4e-15	169	253	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k + + t +s s+++yf++++ Jcr4S00447.30 169 WTEYETFVLLDAWGDKFLQRGRKSLRSEEWQEVAEKVSEvSKIERTDTQCRNRLDTLKKKYKKEKINLAD-TGGSISKWVYFKKMD 253 ***********************************762678******************99998.69999*******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-5	132	139	IPR009057	Homeodomain-like
Pfam	PF13837	9.2E-22	168	255	No hit	No description
PROSITE profile	PS50090	6.086	169	226	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	2.8E-5	194	235	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MRLKMMQGTP PNPYGVNHQQ QGYGSSNRQK LPVRNAPYSR AIGNQYVDDE EEEENEEEEE 60 DEELGEEDGE NNQNNGIRYV GKDVDDDDDE DDDDDEEDAD VDEEEEEDED DNQKNFRTDD 120 VDLERHPKKR KLKSLVSSYE FAPRLPAPPV TAPSAPKPSF AGRNPLTDWT EYETFVLLDA 180 WGDKFLQRGR KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KEKINLADTG 240 GSISKWVYFK KMDMLMSTSA QQGGLSCGVD SGEYVFMNPR VYLNRANGLD EMRDSPGNSE 300 SAEGEDDSDG LPPKKRKSGR EHNEGSSFRL LADSIQKFSE IYEKIETNKR QQMLELEKMR 360 MDFHRDLEMQ KRQIMERAHA EIAKIREGED EENEVSADNA SG

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MRLKMMQGTP PNPYGVNHQQ QGYGSSNRQK LPVRNAPYSR AIGNQYVDDE EEEENEEEEE  60
DEELGEEDGE NNQNNGIRYV GKDVDDDDDE DDDDDEEDAD VDEEEEEDED DNQKNFRTDD  120
VDLERHPKKR KLKSLVSSYE FAPRLPAPPV TAPSAPKPSF AGRNPLTDWT EYETFVLLDA  180
WGDKFLQRGR KSLRSEEWQE VAEKVSEVSK IERTDTQCRN RLDTLKKKYK KEKINLADTG  240
GSISKWVYFK KMDMLMSTSA QQGGLSCGVD SGEYVFMNPR VYLNRANGLD EMRDSPGNSE  300
SAEGEDDSDG LPPKKRKSGR EHNEGSSFRL LADSIQKFSE IYEKIETNKR QQMLELEKMR  360
MDFHRDLEMQ KRQIMERAHA EIAKIREGED EENEVSADNA SG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB525664	0.0	AB525664.1 Jatropha curcas DNA, microsatellite marker JGAA55.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012073331.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A067KQH9	0.0	A0A067KQH9_JATCU; Uncharacterized protein
STRING	cassava4.1_009108m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	8e-78	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	105634968

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]