PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00431.60 | ||||||||
Common Name | JCGZ_11566, LOC105640476 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | LBD | ||||||||
Protein Properties | Length: 291aa MW: 32448 Da PI: 5.6446 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.9 | 4.6e-40 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkC+++C+lapyfp +qpk f+n+hklFG+sn+lk++k+l+ ++ +am+s++y+A++r r Pv+G+ g+i +l+ q++q+++el++ Jcr4S00431.60 10 ACAACKYQRRKCSSECPLAPYFPPDQPKMFQNAHKLFGVSNILKIIKDLDAPQKAEAMRSIIYQANIRDRFPVHGCWGIICQLHFQIRQAEEELHA 105 7*********************************************************************************************** PP DUF260 97 lkeel 101 ++++l Jcr4S00431.60 106 VHAQL 110 *9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.095 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-38 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MTLKGGTSQA CAACKYQRRK CSSECPLAPY FPPDQPKMFQ NAHKLFGVSN ILKIIKDLDA 60 PQKAEAMRSI IYQANIRDRF PVHGCWGIIC QLHFQIRQAE EELHAVHAQL EMYRQHHQHQ 120 ISSLTDDVPS QLELGMAPPT NALSLFSHNT PQPYNTVNVL PVSQQHSYSN SSNVSYSSGY 180 LDSKDHLGNS MWVQHAYGGA TTTNNDNNNS SNSMALQSQL VASQPLAIQQ EVVQDYDEIH 240 PFFDTIDDID SKEAYNSSSE ESLKDTTESI EHVADNELKN AAACFSLTSV N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-28 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012080183.1 | 0.0 | LOB domain-containing protein 27 | ||||
Swissprot | Q9STS6 | 8e-58 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A067KG13 | 0.0 | A0A067KG13_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_033210m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4415 | 29 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-53 | LOB domain-containing protein 27 |
Link Out ? help Back to Top | |
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Entrez Gene | 105640476 |
Publications ? help Back to Top | |||
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