PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00429.50 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | Trihelix | ||||||||
Protein Properties | Length: 897aa MW: 102295 Da PI: 7.1488 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 56.2 | 9.3e-18 | 641 | 729 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+qe+ +Li+a++e++ +l+rg+lk+++W+ev+ + + +++ +qC++k+e+l+kry++++++ + + + +++yfd ++ Jcr4S00429.50 641 WTHQETVHLIQAYQEKWYSLKRGQLKANQWQEVATTVaarcgydYNGHPTKTVIQCRHKMEKLRKRYREERRRVSV---TGVCSWQYFDLMD 729 *************************************98888865555689******************9998886...35568****9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46938 | 1.96E-17 | 71 | 138 | IPR011074 | CRAL/TRIO, N-terminal domain |
Gene3D | G3DSA:3.40.525.10 | 4.5E-33 | 72 | 179 | IPR001251 | CRAL-TRIO lipid binding domain |
SMART | SM01100 | 2.9E-5 | 97 | 122 | IPR011074 | CRAL/TRIO, N-terminal domain |
SuperFamily | SSF52087 | 3.4E-46 | 141 | 307 | IPR001251 | CRAL-TRIO lipid binding domain |
SMART | SM00516 | 4.0E-31 | 142 | 283 | IPR001251 | CRAL-TRIO lipid binding domain |
PROSITE profile | PS50191 | 18.727 | 142 | 286 | IPR001251 | CRAL-TRIO lipid binding domain |
CDD | cd00170 | 1.08E-31 | 143 | 280 | No hit | No description |
Pfam | PF00650 | 6.2E-22 | 178 | 281 | IPR001251 | CRAL-TRIO lipid binding domain |
Gene3D | G3DSA:3.40.525.10 | 4.0E-41 | 180 | 302 | IPR001251 | CRAL-TRIO lipid binding domain |
Pfam | PF13837 | 6.9E-20 | 640 | 731 | No hit | No description |
PROSITE profile | PS50090 | 6.086 | 640 | 704 | IPR017877 | Myb-like domain |
SMART | SM00595 | 3.0E-9 | 648 | 736 | IPR006578 | MADF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 897 aa Download sequence Send to blast |
MTGEAISVQE NERAKGVDLE TSEDEKRRTK VRSLKKKAMS ASNRLTHSLR KRSKRVADCR 60 YAAISINDVR DAKEEAAVNA FRQTLIAKDL LPSRHDDYHT LLRFLKARKF DLDRTLLMWS 120 EMLNWRKENG VDSIIQDFVY DEYEEVQRYY PHAYHGVDKE GRPVYIERLG KIEPSKLMTK 180 RHVDSTVTIL DVHGLNWVSF GKVAHDLVMR LQKIDGDNYP ETLHQMFIVN AGSGFKFLWN 240 TAKSFLDPRT TAKINVLGNK FQNKLLEIID SSQLPDFLGG SCSCPNEGGC LRSDKGPWND 300 PEIMKLVHAG EAMYLTKMKS FSDDDDFEIK LFASKVSRSE ISSADSGLDI KPNTSGFIQE 360 MPLSEEGRTA DHASVCSLVE HIPARIEDSS LTSSQITSLP AIVWHSHVQG KLCPVIQNNS 420 TNDVSTRMVQ NRFIPHVTSY VVYFMFKLLA WIYLLLPRMG RVFTSRRTER PLPSQPNLPL 480 ADSTSQEQHI PRETKEEIVH PCFQRLQNLE AMVNELVNKP TKIPPEKEDM LLESLSRIRS 540 IEYDLQKTKK ALLATASKQV ELAESLENLK ESALAPPPPP PPPPPPLAPP NTQQQNHTFQ 600 TLTLTPHIRT MATPSPSPSP PPPPESPSSK PKGKKPHPVP WTHQETVHLI QAYQEKWYSL 660 KRGQLKANQW QEVATTVAAR CGYDYNGHPT KTVIQCRHKM EKLRKRYREE RRRVSVTGVC 720 SWQYFDLMDS LDRGPVPIQA RPLSLIPPND TEEEEEEDSE EEGEEEEEEE NYGYRSKSRS 780 INYILRKPTI VNRFAGSDSG FIRAAVAATK RKREEMAAAV QVVEEEEVEE DAAGLSLAGE 840 IRAFTERMVG MERKKMEIMK ETEKLRMEME NKKMEMILDS QRKIVGTVFA AFGLRED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1aua_A | 9e-39 | 71 | 304 | 27 | 288 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P |
6f0e_A | 1e-38 | 71 | 304 | 38 | 299 | SEC14 cytosolic factor |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012085100.1 | 0.0 | phosphatidylinositol/phosphatidylcholine transfer protein SFH9 | ||||
Refseq | XP_012085101.1 | 0.0 | phosphatidylinositol/phosphatidylcholine transfer protein SFH9 | ||||
Swissprot | F4J7S8 | 0.0 | SFH9_ARATH; Phosphatidylinositol/phosphatidylcholine transfer protein SFH9 | ||||
TrEMBL | A0A067JR72 | 0.0 | A0A067JR72_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_029807m | 0.0 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24860.1 | 8e-39 | Trihelix family protein |
Publications ? help Back to Top | |||
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