PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00429.50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 897aa    MW: 102295 Da    PI: 7.1488
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00429.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.29.3e-18641729286
       trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt+qe+ +Li+a++e++ +l+rg+lk+++W+ev+  +         +  +++ +qC++k+e+l+kry++++++ +    + + +++yfd ++
  Jcr4S00429.50 641 WTHQETVHLIQAYQEKWYSLKRGQLKANQWQEVATTVaarcgydYNGHPTKTVIQCRHKMEKLRKRYREERRRVSV---TGVCSWQYFDLMD 729
                    *************************************98888865555689******************9998886...35568****9997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF469381.96E-1771138IPR011074CRAL/TRIO, N-terminal domain
Gene3DG3DSA:3.40.525.104.5E-3372179IPR001251CRAL-TRIO lipid binding domain
SMARTSM011002.9E-597122IPR011074CRAL/TRIO, N-terminal domain
SuperFamilySSF520873.4E-46141307IPR001251CRAL-TRIO lipid binding domain
SMARTSM005164.0E-31142283IPR001251CRAL-TRIO lipid binding domain
PROSITE profilePS5019118.727142286IPR001251CRAL-TRIO lipid binding domain
CDDcd001701.08E-31143280No hitNo description
PfamPF006506.2E-22178281IPR001251CRAL-TRIO lipid binding domain
Gene3DG3DSA:3.40.525.104.0E-41180302IPR001251CRAL-TRIO lipid binding domain
PfamPF138376.9E-20640731No hitNo description
PROSITE profilePS500906.086640704IPR017877Myb-like domain
SMARTSM005953.0E-9648736IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MTGEAISVQE NERAKGVDLE TSEDEKRRTK VRSLKKKAMS ASNRLTHSLR KRSKRVADCR  60
YAAISINDVR DAKEEAAVNA FRQTLIAKDL LPSRHDDYHT LLRFLKARKF DLDRTLLMWS  120
EMLNWRKENG VDSIIQDFVY DEYEEVQRYY PHAYHGVDKE GRPVYIERLG KIEPSKLMTK  180
RHVDSTVTIL DVHGLNWVSF GKVAHDLVMR LQKIDGDNYP ETLHQMFIVN AGSGFKFLWN  240
TAKSFLDPRT TAKINVLGNK FQNKLLEIID SSQLPDFLGG SCSCPNEGGC LRSDKGPWND  300
PEIMKLVHAG EAMYLTKMKS FSDDDDFEIK LFASKVSRSE ISSADSGLDI KPNTSGFIQE  360
MPLSEEGRTA DHASVCSLVE HIPARIEDSS LTSSQITSLP AIVWHSHVQG KLCPVIQNNS  420
TNDVSTRMVQ NRFIPHVTSY VVYFMFKLLA WIYLLLPRMG RVFTSRRTER PLPSQPNLPL  480
ADSTSQEQHI PRETKEEIVH PCFQRLQNLE AMVNELVNKP TKIPPEKEDM LLESLSRIRS  540
IEYDLQKTKK ALLATASKQV ELAESLENLK ESALAPPPPP PPPPPPLAPP NTQQQNHTFQ  600
TLTLTPHIRT MATPSPSPSP PPPPESPSSK PKGKKPHPVP WTHQETVHLI QAYQEKWYSL  660
KRGQLKANQW QEVATTVAAR CGYDYNGHPT KTVIQCRHKM EKLRKRYREE RRRVSVTGVC  720
SWQYFDLMDS LDRGPVPIQA RPLSLIPPND TEEEEEEDSE EEGEEEEEEE NYGYRSKSRS  780
INYILRKPTI VNRFAGSDSG FIRAAVAATK RKREEMAAAV QVVEEEEVEE DAAGLSLAGE  840
IRAFTERMVG MERKKMEIMK ETEKLRMEME NKKMEMILDS QRKIVGTVFA AFGLRED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1aua_A9e-397130427288PHOSPHATIDYLINOSITOL TRANSFER PROTEIN SEC14P
6f0e_A1e-387130438299SEC14 cytosolic factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012085100.10.0phosphatidylinositol/phosphatidylcholine transfer protein SFH9
RefseqXP_012085101.10.0phosphatidylinositol/phosphatidylcholine transfer protein SFH9
SwissprotF4J7S80.0SFH9_ARATH; Phosphatidylinositol/phosphatidylcholine transfer protein SFH9
TrEMBLA0A067JR720.0A0A067JR72_JATCU; Uncharacterized protein
STRINGcassava4.1_029807m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.18e-39Trihelix family protein
Publications ? help Back to Top
  1. Vincent P, et al.
    A Sec14p-nodulin domain phosphatidylinositol transfer protein polarizes membrane growth of Arabidopsis thaliana root hairs.
    J. Cell Biol., 2005. 168(5): p. 801-12
    [PMID:15728190]
  2. Ile KE,Schaaf G,Bankaitis VA
    Phosphatidylinositol transfer proteins and cellular nanoreactors for lipid signaling.
    Nat. Chem. Biol., 2006. 2(11): p. 576-83
    [PMID:17051233]