PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Jcr4S00408.110

Common Name

JCGZ_14504, LOC105643098

Organism

Jatropha curcas

Taxonomic ID

180498

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha

Family

GRF

Protein Properties

Length: 449aa MW: 48368.4 Da PI: 9.0063

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Jcr4S00408.110	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	63.6	2.9e-20	332	371	1	40
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsr 40 ++ep+rCrRtDGKkWRC+r+v++++k+C H+hrg +++ Jcr4S00408.110 332 EPEPRRCRRTDGKKWRCRRDVVPNEKYCKMHMHRGAKKRV 371 69*********************************87765 PP
2	QLQ	37.6	6.8e-14	69	103	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +TaaQl +L +Q+ +y+y+aa++ vP+ L+++i+k Jcr4S00408.110 69 LTAAQLDELQRQVAIYRYIAAGLIVPSALVLPIWK 103 8********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	9.6E-6	67	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	17.052	68	103	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-8	69	102	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	21.189	332	376	IPR014977	WRC domain
Pfam	PF08879	4.8E-17	333	371	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MVMELEAKPL LTASSCGSHK SGDDKVRTLV TEVKKSQVKE EVVSPSMKVG IGIAVAHGPA 60 IIRHGKPLLT AAQLDELQRQ VAIYRYIAAG LIVPSALVLP IWKSVAASSG FANGGIYRPY 120 PSIVEFSPQD LNYRNMMDSE PVRGRQRSRK PVEASQTVTD SNATPLHNSI KNSPNVNCSS 180 STPATLSNNP VISCKSSSTA CSNLDATLNC TTKTTSVVNV PKSISTNMTP SGVAGCIKST 240 AVTINGNVHM DSTVTTAIVG TNKNCNENYH MTNVISDKYA NCSNYVSLKN LIGGGSNSKD 300 IRNTQGATSQ GFDFSQNSVL QRDPHFFRSY AEPEPRRCRR TDGKKWRCRR DVVPNEKYCK 360 MHMHRGAKKR VEVSEPPASG NSTSSHPRTP AILPTKENVI TDLNTNLSIS ISVNPQLVTN 420 DNASDNTVSS DTTISDTIVA SCEDGDFSS

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MVMELEAKPL LTASSCGSHK SGDDKVRTLV TEVKKSQVKE EVVSPSMKVG IGIAVAHGPA  60
IIRHGKPLLT AAQLDELQRQ VAIYRYIAAG LIVPSALVLP IWKSVAASSG FANGGIYRPY  120
PSIVEFSPQD LNYRNMMDSE PVRGRQRSRK PVEASQTVTD SNATPLHNSI KNSPNVNCSS  180
STPATLSNNP VISCKSSSTA CSNLDATLNC TTKTTSVVNV PKSISTNMTP SGVAGCIKST  240
AVTINGNVHM DSTVTTAIVG TNKNCNENYH MTNVISDKYA NCSNYVSLKN LIGGGSNSKD  300
IRNTQGATSQ GFDFSQNSVL QRDPHFFRSY AEPEPRRCRR TDGKKWRCRR DVVPNEKYCK  360
MHMHRGAKKR VEVSEPPASG NSTSSHPRTP AILPTKENVI TDLNTNLSIS ISVNPQLVTN  420
DNASDNTVSS DTTISDTIVA SCEDGDFSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012083546.1	0.0	growth-regulating factor 9
TrEMBL	A0A067K148	0.0	A0A067K148_JATCU; Uncharacterized protein
STRING	cassava4.1_032797m	1e-124	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9228	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45480.1	3e-16	growth-regulating factor 9

Link Out ? help Back to Top
Entrez Gene	105643098

Publications ? help Back to Top
Zhang L, et al. Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress. PLoS ONE, 2014. 9(5): p. e97878 [PMID:24837971]