PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00398.90
Common NameJCGZ_18353, LOC105642045
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 311aa    MW: 36434.9 Da    PI: 5.6774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00398.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28e-183279148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++++G g+W+  a++ g++Rt+k+c++rw++yl
    Jcr4S00398.90 32 RGPWTLEEDTLLTHYIARHGEGRWNMLAKYAGLKRTGKSCRLRWLNYL 79
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1685128146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
    Jcr4S00398.90  85 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 128
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1522779IPR017930Myb domain
SuperFamilySSF466896.36E-3130126IPR009057Homeodomain-like
SMARTSM007173.8E-153181IPR001005SANT/Myb domain
PfamPF002493.3E-163279IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-233386IPR009057Homeodomain-like
CDDcd001674.99E-113479No hitNo description
PROSITE patternPS0017504756IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.93280134IPR017930Myb domain
SMARTSM007172.0E-1584132IPR001005SANT/Myb domain
PfamPF002491.1E-1585128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2387133IPR009057Homeodomain-like
CDDcd001674.84E-1189128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MQSMRAPMSS VTKRMCNNIT NNSSEEESEL RRGPWTLEED TLLTHYIARH GEGRWNMLAK  60
YAGLKRTGKS CRLRWLNYLK PDIKRGNLTP QEQLLILELH SKWGNRWSKI AQHLPGRTDN  120
EIKNYWRTRV QRQARQLNIE SNSKRFLDAV RCFWMPRLLQ KVEQANSCSF SPLKTLQDSE  180
THELANFTLP DNNSFPQQYP ILENESPTSV YHLPTITGTT TTNPDSTEIS QYQPEILENR  240
ASPPLLDENV YNNLIMNESY YDMEGFNPMP EIGTFHDSTK ECQMEESNNW AFDDGMADTL  300
WNMDDIWQFR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-26291344108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0347380.0KM034738.1 Jatropha curcas clone JcMYB119 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082112.10.0transcription factor MYB62 isoform X2
SwissprotQ9C9G75e-91MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A067JZX50.0A0A067JZX5_JATCU; MYB family protein
STRINGcassava4.1_012290m1e-137(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-89myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]