PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00396.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | ARF | ||||||||
Protein Properties | Length: 387aa MW: 42572.1 Da PI: 8.262 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.7 | 1e-23 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + ++ Jcr4S00396.40 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RAES 203 89****************************996555555..8************************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 + l+++++r+ Jcr4S00396.40 204 GDLCLGIRRA 213 999***9996 PP | |||||||
2 | Auxin_resp | 116.3 | 2.6e-38 | 276 | 359 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++Fe vY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+ Jcr4S00396.40 276 AAALAANGQPFEAVYYPRASTPEFCVKASSVRAAMRIQWCCGMRFKMAFETEDSSRISWfMGTVASVQVADPIRWPNSPWRLLQ 359 678899****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-37 | 104 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.41E-30 | 108 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.73E-21 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 4.3E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 112 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.5E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.2E-33 | 276 | 359 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MKELDKGLDP QLWHACAGSM VQIPPINSKV FYFPQGHAEH SQSPVDFSSS PRIHALILCR 60 VAAVKYLADS ETDEVYAKIS LFPLPNNELN FGEEMGICDN NNGNNTEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL VAGDSIVFLR AESGDLCLGI RRAKRGTGGN GLDSSPPSGW TSTTNGSCIN 240 PYGGFSLFLK EDENKRNVGG LLRGRGRVRA EEVLEAAALA ANGQPFEAVY YPRASTPEFC 300 VKASSVRAAM RIQWCCGMRF KMAFETEDSS RISWFMGTVA SVQVADPIRW PNSPWRLLQE 360 NDSFSRLVCS GSGRTAVVVA ANDHRSH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 2e-73 | 8 | 359 | 51 | 367 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064809.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q653H7 | 1e-175 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A067L6E1 | 0.0 | A0A067L6E1_JATCU; Auxin response factor | ||||
STRING | cassava4.1_004716m | 0.0 | (Manihot esculenta) | ||||
STRING | XP_002529941.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23977 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 1e-175 | auxin response factor 10 |
Publications ? help Back to Top | |||
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