PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00396.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 390aa    MW: 44088 Da    PI: 9.071
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00396.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.93.2e-19303336134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +
  Jcr4S00396.30 303 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 336
                    *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.7E-18297347IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714297333IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-14301334IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.6E-15301360No hitNo description
CDDcd002025.00E-15302349No hitNo description
PfamPF003204.4E-17303336IPR000679Zinc finger, GATA-type
PROSITE patternPS003440303328IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MNANTNTNGS WFFDENFNGV PDDFFDDAME LLDFPLENVE LNDLGEDWEV KFQQLVPPPS  60
NVLAGLCGEN GNDILKVKKS SSVLRVEIVP SVRVPGKCGF CFREDFLKLF SVAVSICGDS  120
LARHFYDYDK RDKNNHILEG IGSLWQYPSV HDESSQPKQW PSTAEASSGR GIPLNYDSSE  180
AKYSRLFWTS SPVSVLESSS SSSSAENAVV QHPKFVIPVK RPRSKRPRSK RPHPHRRTFP  240
FISYAPKQYH PLGSESETES CPDEKMLNVA KRKQKKKRNL MLLSCTVEMK KSSTQQPIEI  300
RKCTHCEVTK TPQWREGPMG PKTLCNACGV RYRSGRLFPE YRPAASPTFV PSLHSNSHRK  360
VVEMRKKTTR PMTTTAAMDA SLPTVPEYSF
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012064808.10.0GATA transcription factor 11
TrEMBLA0A067LHG20.0A0A067LHG2_JATCU; Uncharacterized protein
STRINGXP_002529940.11e-116(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-39GATA transcription factor 11