PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00396.30 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | GATA | ||||||||
Protein Properties | Length: 390aa MW: 44088 Da PI: 9.071 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.9 | 3.2e-19 | 303 | 336 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C +tkTp+WR+gp g+ktLCnaCG++yr+ + Jcr4S00396.30 303 CTHCEVTKTPQWREGPMGPKTLCNACGVRYRSGR 336 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.7E-18 | 297 | 347 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.714 | 297 | 333 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.1E-14 | 301 | 334 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 7.6E-15 | 301 | 360 | No hit | No description |
CDD | cd00202 | 5.00E-15 | 302 | 349 | No hit | No description |
Pfam | PF00320 | 4.4E-17 | 303 | 336 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 303 | 328 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MNANTNTNGS WFFDENFNGV PDDFFDDAME LLDFPLENVE LNDLGEDWEV KFQQLVPPPS 60 NVLAGLCGEN GNDILKVKKS SSVLRVEIVP SVRVPGKCGF CFREDFLKLF SVAVSICGDS 120 LARHFYDYDK RDKNNHILEG IGSLWQYPSV HDESSQPKQW PSTAEASSGR GIPLNYDSSE 180 AKYSRLFWTS SPVSVLESSS SSSSAENAVV QHPKFVIPVK RPRSKRPRSK RPHPHRRTFP 240 FISYAPKQYH PLGSESETES CPDEKMLNVA KRKQKKKRNL MLLSCTVEMK KSSTQQPIEI 300 RKCTHCEVTK TPQWREGPMG PKTLCNACGV RYRSGRLFPE YRPAASPTFV PSLHSNSHRK 360 VVEMRKKTTR PMTTTAAMDA SLPTVPEYSF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00047 | PBM | Transfer from AT1G08000 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012064808.1 | 0.0 | GATA transcription factor 11 | ||||
TrEMBL | A0A067LHG2 | 0.0 | A0A067LHG2_JATCU; Uncharacterized protein | ||||
STRING | XP_002529940.1 | 1e-116 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5758 | 28 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 2e-39 | GATA transcription factor 11 |