PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00392.30
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family MYB
Protein Properties Length: 210aa    MW: 23724 Da    PI: 9.9706
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00392.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+lv+++k +G g+W++ ++  g+ R++k+c++rw +yl
    Jcr4S00392.30 14 KGAWTKEEDERLVNYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding60.24.3e-1967111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W++Ia++++ gRt++++k++w+++
    Jcr4S00392.30  67 RGNFTEEEDELIINLHSLLGTK-WSLIAARLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.317961IPR017930Myb domain
SuperFamilySSF466898.81E-3013108IPR009057Homeodomain-like
SMARTSM007178.4E-141363IPR001005SANT/Myb domain
PfamPF002499.3E-161461IPR001005SANT/Myb domain
CDDcd001671.70E-101661No hitNo description
PROSITE profilePS5129428.76162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-2865116IPR009057Homeodomain-like
SMARTSM007171.3E-1766114IPR001005SANT/Myb domain
PfamPF002491.6E-1767111IPR001005SANT/Myb domain
CDDcd001679.11E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLVNYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN LHSLLGTKWS LIAARLPGRT DNEIKNYWNT HIRRKLYSRG  120
IDPQTHRPLN STATAATTTA ASAALSNSRD NKDNNNNNNI SGNNCVSKIE TQNSPLAPFL  180
QIPHLMKIPT VAVELPAQKK FTQKSILSYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0346721e-155KM034672.1 Jatropha curcas clone JcMYB052 MYB family protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089895.11e-133myb-related protein 308-like
RefseqXP_012092848.21e-133myb-related protein 308
SwissprotP813939e-89MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A067JT701e-132A0A067JT70_JATCU; MYB family protein
STRINGcassava4.1_011863m6e-93(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-88myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]