PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00379.110
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family GATA
Protein Properties Length: 122aa    MW: 13708.9 Da    PI: 10.0248
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00379.110genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.7e-193165135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C+ C+tt Tp+WR gp g+ktLCnaCG++yrkk++
  Jcr4S00379.110 31 CTDCHTTRTPCWRVGPAGPKTLCNACGIRYRKKRR 65
                    ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.0442561IPR000679Zinc finger, GATA-type
SMARTSM004011.9E-132591IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-132865No hitNo description
Gene3DG3DSA:3.30.50.106.4E-152965IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.43E-133065No hitNo description
PfamPF003208.0E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
VFLHVLKQDQ ETEETLNNTP SSNCSELKKS CTDCHTTRTP CWRVGPAGPK TLCNACGIRY  60
RKKRRDLFGL DKGGKDKSKK KIAKSSRSKL GMLLQEQWKR KLGEEEQAAF LLMALSYGCV  120
SA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012082847.19e-62GATA transcription factor 15
SwissprotQ9FJ103e-26GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A067K7K21e-59A0A067K7K2_JATCU; Uncharacterized protein
STRINGcassava4.1_019027m7e-54(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15693298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.18e-26GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]