PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00377.70 | ||||||||
Common Name | JCGZ_04505, JHL18I08.14, LOC105633874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | SRS | ||||||||
Protein Properties | Length: 315aa MW: 34715.2 Da PI: 8.4742 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 225.5 | 9.8e-70 | 92 | 250 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.......kskkqs 84 g+++CqdCGnqakkdCah RCRtCCksrgf+C+thvkstWvpaakrrerqqql+a+++++++++ + + ++++ Jcr4S00377.70 92 GGGMNCQDCGNQAKKDCAHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLSALQQQQQHQEqqhqqqqQ-------QFRgenpkrqRENQGG 180 5789***************************************************999988877745444331.......2212233333555666 PP DUF702 85 alsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 a s + + +++++ le++++P+ev+s+avfrcv+vs++dd++e++aYqtav+igGh+f+G+LydqG+++ Jcr4S00377.70 181 APSLACTRLGTTTSGLEVAHFPPEVNSPAVFRCVKVSAMDDADEQFAYQTAVNIGGHMFRGLLYDQGPDS 250 6666666677778889****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.0E-66 | 94 | 249 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.9E-27 | 96 | 138 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.6E-25 | 200 | 248 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGWFYLSGR EGAVTSKQGE DKNQENNLFL YRSNNEQIYN KGFEIWPQYY HQQQNMNNYS 60 SFGVGPSRRS FSDESSRSGF TVMRQGGLGG GGGGMNCQDC GNQAKKDCAH LRCRTCCKSR 120 GFQCQTHVKS TWVPAAKRRE RQQQLSALQQ QQQHQEQQHQ QQQQQFRGEN PKRQRENQGG 180 APSLACTRLG TTTSGLEVAH FPPEVNSPAV FRCVKVSAMD DADEQFAYQT AVNIGGHMFR 240 GLLYDQGPDS RYTSGGESSS GGAQQLNLIT AATTSTEATP SNQQGTGALI DPSSLYPAPL 300 NAFIAGTQFF PPPRS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP011966 | 0.0 | AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012071961.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
Swissprot | Q9LQZ5 | 2e-94 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | E6NU70 | 0.0 | E6NU70_JATCU; JHL18I08.14 protein | ||||
STRING | XP_002510471.1 | 1e-157 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 2e-81 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
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Entrez Gene | 105633874 |
Publications ? help Back to Top | |||
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