PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00376.80
Common NameJCGZ_23481, LOC105647676
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family Trihelix
Protein Properties Length: 518aa    MW: 59696.7 Da    PI: 6.9214
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00376.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.71.1e-162284269
       trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69
                   W+++evlaL+++r++me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++ +i+ +++
  Jcr4S00376.80 22 WSNDEVLALLRIRSSMENWFPEF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESRYFNNINYSKN 84
                   ********************998.....9*******************************99987655 PP
2trihelix963.6e-30367455186
       trihelix   1 rWtkqevlaLiearreme.erlr...rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    rW+k+evlaLi++r++   ++++   ++  k+plWe++s+ m e g++rs+k+Ckekwen+nk++kk+k+ +kkr s +s+tcpyf+ql 
  Jcr4S00376.80 367 RWPKDEVLALINLRSSFYnNNINeekETTVKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFKKTKDVNKKR-SVDSRTCPYFHQLS 455
                    8**************654034441114569********************************************8.78889*******95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717151875IPR001005SANT/Myb domain
PfamPF138371.9E-112092No hitNo description
PROSITE profilePS500906.2842173IPR017877Myb-like domain
SMARTSM007170.0018364430IPR001005SANT/Myb domain
PfamPF138372.3E-20366455No hitNo description
CDDcd122032.39E-23366435No hitNo description
PROSITE profilePS500906.876367428IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MVATMDLEIE RERSIHQSVD PWSNDEVLAL LRIRSSMENW FPEFTWEHVS RKLAELGFKR  60
SAEKCKEKFE EESRYFNNIN YSKNYRFFGE LEELYNNGDD TNNNSQSYPQ ENNLATAGKN  120
KKMDKLASEE EEDKIDHEKN MEEDSRIDQT VGNPTEDNDN NDEGKEIEKS KSKKRKRRHK  180
KFEMFKGFCE DIIRRIMVQQ EEMHNKLLED IAKRDEEKIA REEAWKKQEM ERIKKELEIR  240
AQEQALVGDR QAKIINFLKK FSSSSTSSDS IEILGETTTS SSMVIPKNPN KQISKPETPI  300
STTIALGHQT NPVIISKNPS SSSTLSHPPQ NSIFLNTQSK PSMPISLWTE IAQRKPSPSN  360
KEDLGKRWPK DEVLALINLR SSFYNNNINE EKETTVKAPL WERISQGMLE LGYKRSAKRC  420
KEKWENINKY FKKTKDVNKK RSVDSRTCPY FHQLSTLYNQ GSLVITSSDG VQKRSVAASP  480
ENHSSDAGGG LISSSQNGSS NSAMHVVEGE KHDLDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177KKRKRR
2172180KKRKRRHKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012089242.10.0trihelix transcription factor GTL2
SwissprotQ8H1811e-106GTL2_ARATH; Trihelix transcription factor GTL2
TrEMBLA0A067JLE60.0A0A067JLE6_JATCU; Uncharacterized protein
STRINGcassava4.1_023137m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-105Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]