PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00364.80
Common NameJCGZ_18709
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 474aa    MW: 52106.4 Da    PI: 6.1542
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00364.80genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.84.2e-11220276155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a+ k++g
  Jcr4S00364.80 220 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAAMKYWG 276
                    57*******************4444.2344336655.779999**************98 PP
2AP250.45.6e-16319370155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Jcr4S00364.80 319 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 370
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.7E-9220276IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-15220286IPR016177DNA-binding domain
CDDcd000182.43E-19220286No hitNo description
SMARTSM003802.8E-22221290IPR001471AP2/ERF domain
PROSITE profilePS5103217.451221284IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-12221285IPR001471AP2/ERF domain
PRINTSPR003671.5E-6222233IPR001471AP2/ERF domain
PfamPF008472.2E-10319370IPR001471AP2/ERF domain
CDDcd000182.36E-11319380No hitNo description
SuperFamilySSF541715.82E-18319380IPR016177DNA-binding domain
PROSITE profilePS5103219.203320378IPR001471AP2/ERF domain
SMARTSM003801.6E-31320384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18320379IPR001471AP2/ERF domain
PRINTSPR003671.5E-6360380IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010080Biological Processregulation of floral meristem growth
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0035265Biological Processorgan growth
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MAPATNWLSF SLSPMEMLRS SESQFMSYEG SSTASPHYLI DNFYANGWGN SKEAQVATTM  60
AETSILTSFI DPETQHHHAP KLEDFLGDSS SIVRYSDNSQ TETQDSTLTH IYDQGPAAYF  120
NEQQDLKVIA GIQAFSTNSG SEVDDSASMA RTQLGGGEFV GHSIESSGNE LGFSSCTGAN  180
NALSLAVNNN NNQSSAEKSI VPVESDCPKK IADTFGQRTS IYRGVTRHRW TGRYEAHLWD  240
NSCRREGQAR KGRQGGYDKE EKAARAYDLA AMKYWGPTAT TNFPVSNYTK ELEEMKYVSK  300
QEFIASLRRK SSGFSRGASI YRGVTRHHQQ GRWQARIGRV AGNKDLYLGT FATEEEAAEA  360
YDIAAIKFRG MNAVTNFEMS RYDVEAIMKS ALPIGSSNSS NNISFASIPP VSAIPCGIPF  420
DNTTALYHHN LFHYLPSGNN LGGTDSSGST SSMGIPMTTL PQTAEFFIWP HQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00504DAPTransfer from AT5G10510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0220031e-128KF022003.1 Jatropha curcas APETALA2-ethylene-responsive element binding protein 2 (AP2-EREBP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012081678.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU20.0AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A067KD770.0A0A067KD77_JATCU; Uncharacterized protein
STRINGcassava4.1_020976m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48103149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-180AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]
  2. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  3. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  4. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]