PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00363.90 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 246aa MW: 28073.1 Da PI: 5.0688 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.9 | 1.3e-26 | 61 | 149 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+ Jcr4S00363.90 61 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 149 9**************************************999999989***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-24 | 61 | 149 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLNQSDMDDK LDLDEGVGTG ENSAGHELVV QEGDIVMQEG DSIVEPHEGM EFESEDAAKI 60 FYDEYARRVG FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNV RKPRPSTREG 120 CKAMIHVKFD KSGKWVITKF VKDHNHPLVV APREARQTMP VILMESPMTE RLAVSLVPCV 180 GFLNINDCTL DAKQEGSNGY IVCQYYVDAL YFLQPKPYEI MILIEELKFQ NFQEAYYNPS 240 DYQCPC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214628 | 1e-115 | AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065183.1 | 1e-116 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067L617 | 1e-109 | A0A067L617_JATCU; Uncharacterized protein | ||||
STRING | XP_002533360.1 | 2e-95 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-74 | FAR1 family protein |