PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00363.90
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 246aa    MW: 28073.1 Da    PI: 5.0688
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00363.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.91.3e-2661149290
           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                    fY+eYA++vGF +r+ + ++s+r+g+i  r++ C+keg+  + + k  + r++r++tr gCka+++vk +k+gkw++tk++++HnH+l+
  Jcr4S00363.90  61 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKDHNHPLV 149
                    9**************************************999999989***************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2461149IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MLNQSDMDDK LDLDEGVGTG ENSAGHELVV QEGDIVMQEG DSIVEPHEGM EFESEDAAKI  60
FYDEYARRVG FVMRVMSCRR SERDGRILAR RLGCNKEGYC VSIRGKFGNV RKPRPSTREG  120
CKAMIHVKFD KSGKWVITKF VKDHNHPLVV APREARQTMP VILMESPMTE RLAVSLVPCV  180
GFLNINDCTL DAKQEGSNGY IVCQYYVDAL YFLQPKPYEI MILIEELKFQ NFQEAYYNPS  240
DYQCPC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146281e-115AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012065183.11e-116protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A067L6171e-109A0A067L617_JATCU; Uncharacterized protein
STRINGXP_002533360.12e-95(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.11e-74FAR1 family protein