PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00363.40 | ||||||||
Common Name | JCGZ_20859, LOC105628392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 256aa MW: 29615.1 Da PI: 6.0069 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 80.4 | 3.3e-25 | 83 | 174 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+ + + +k ++++ +tr+ tr gC+a+l++ ++ gkw+++ + +eH+Hel+p Jcr4S00363.40 83 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFCAGKCTKrENRNFSTRSATREGCNAMLRIAAKDGGKWVIYGFIKEHSHELNP 174 6***************************************887665525666679**********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-22 | 83 | 174 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLDSTLIFDR FVMASTSGQQ FHSNGNYRRW LDETFDGQET TDDELSDNLD GNDSIVQPSV 60 QSFPVALEPA IGMEFESAEN AREFYEMYGR RMGFTIRNNR TRRSLKDNSI IGREFVCSKE 120 GFCAGKCTKR ENRNFSTRSA TREGCNAMLR IAAKDGGKWV IYGFIKEHSH ELNPSKIPPR 180 RSHRIAFNED EKDLKIRELS TELHREKKKS AAYQEQLQMV LKYVEEHTQR LALKIESVAN 240 KVREFEFEEL DGSDSE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020532689.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
Refseq | XP_020532690.1 | 0.0 | protein FAR1-RELATED SEQUENCE 4 isoform X1 | ||||
TrEMBL | A0A067LI00 | 0.0 | A0A067LI00_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014879m | 1e-153 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15811 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-48 | FAR1 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105628392 |
Publications ? help Back to Top | |||
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