PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00363.40
Common NameJCGZ_20859, LOC105628392
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family FAR1
Protein Properties Length: 256aa    MW: 29615.1 Da    PI: 6.0069
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00363.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.43.3e-2583174191
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                    +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+ + + +k ++++ +tr+ tr gC+a+l++  ++ gkw+++ + +eH+Hel+p
  Jcr4S00363.40  83 EFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFCAGKCTKrENRNFSTRSATREGCNAMLRIAAKDGGKWVIYGFIKEHSHELNP 174
                    6***************************************887665525666679**********************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-2283174IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLDSTLIFDR FVMASTSGQQ FHSNGNYRRW LDETFDGQET TDDELSDNLD GNDSIVQPSV  60
QSFPVALEPA IGMEFESAEN AREFYEMYGR RMGFTIRNNR TRRSLKDNSI IGREFVCSKE  120
GFCAGKCTKR ENRNFSTRSA TREGCNAMLR IAAKDGGKWV IYGFIKEHSH ELNPSKIPPR  180
RSHRIAFNED EKDLKIRELS TELHREKKKS AAYQEQLQMV LKYVEEHTQR LALKIESVAN  240
KVREFEFEEL DGSDSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020532689.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
RefseqXP_020532690.10.0protein FAR1-RELATED SEQUENCE 4 isoform X1
TrEMBLA0A067LI000.0A0A067LI00_JATCU; Uncharacterized protein
STRINGcassava4.1_014879m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15811911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07500.14e-48FAR1 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]