PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00363.10 | ||||||||
Common Name | JCGZ_20856, LOC105628389 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | FAR1 | ||||||||
Protein Properties | Length: 254aa MW: 29551 Da PI: 5.3041 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.4 | 1.3e-24 | 76 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + + tr gC+a++++ +++ kw+vtk+++eH+H+l+ Jcr4S00363.10 76 EFYISYGRCAGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPITREGCQAMIRLALRDGVKWVVTKFVKEHTHKLM 166 6******************************************99883333.234899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-21 | 76 | 166 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MDDQSGHGFD SDESDLEIQA ESYEYGRIED DLPNNLDFCV SEEDNVSEQY VGLTINAEGL 60 EPYIGMEFNT RDEAREFYIS YGRCAGFTVR IHHNRRSRVN NQVIGQDFVC SKEGFRAKKY 120 VYRKDRVLPP PPITREGCQA MIRLALRDGV KWVVTKFVKE HTHKLMSPSK VPWRGSGKHL 180 ISEDEKDKRI RELSLELYNE RQKCKRRCAA YEEQLNLILK DLEKHTEHIS KKVNDVVQSI 240 REIEEEQSDD SDSG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012065173.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
Refseq | XP_020532721.1 | 0.0 | protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A067L5V8 | 0.0 | A0A067L5V8_JATCU; Uncharacterized protein | ||||
STRING | cassava4.1_014469m | 1e-170 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8861 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 7e-41 | FAR1 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 105628389 |
Publications ? help Back to Top | |||
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