PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Jcr4S00360.130 | ||||||||
Common Name | JCGZ_16571 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27901.2 Da PI: 5.6739 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.4e-16 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+lv v+++G + W+ Ia g++R++k+c++rw++yl Jcr4S00360.130 15 KGPWLEEEDEQLVTFVTLFGERKWDFIATASGLKRSGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.7 | 2.4e-17 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++eE+++++++++++G++ W++Iar+++ gRt++++k++w+++l Jcr4S00360.130 68 RGHISAEEEQIIIQLHELWGNK-WAKIARKLP-GRTDNEIKNYWRTHL 113 67779*****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.348 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.26E-28 | 13 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.5E-14 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-21 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.88E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 28.053 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-15 | 68 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-25 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.60E-12 | 72 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MACQATSIHG DKLRKGPWLE EEDEQLVTFV TLFGERKWDF IATASGLKRS GKSCRLRWLN 60 YLRPNLKRGH ISAEEEQIII QLHELWGNKW AKIARKLPGR TDNEIKNYWR THLRKKIQAQ 120 EGNFCKENNA KQDFLYQKGD TSSWNCNMEE YKSVADNIGT QESLDQYYEL SSLTYLSSPY 180 ETRLYDWMSE FSGDHDQSEM KIHGDCSGFC SCFCYLQWKA EDGTDNSILD SLGSLWDMN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-27 | 13 | 117 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-27 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-27 | 13 | 117 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM034652 | 0.0 | KM034652.1 Jatropha curcas clone JcMYB032 MYB family protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012082450.1 | 1e-167 | transcription factor MYB27 | ||||
Swissprot | Q9SCP1 | 9e-63 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A067JZ69 | 1e-175 | A0A067JZ69_JATCU; Uncharacterized protein | ||||
TrEMBL | A0A097HUK1 | 1e-179 | A0A097HUK1_JATCU; MYB family protein | ||||
STRING | cassava4.1_029642m | 1e-114 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13169 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 2e-54 | myb domain protein 27 |
Publications ? help Back to Top | |||
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