PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00350.30
Organism
Jatropha curcas
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family CO-like
Protein Properties Length: 451aa    MW: 50807.5 Da    PI: 6.5018
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00350.30genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.84.7e-081759440
       zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                   ++C+ ++ k + lfC+ ++  lC  C ++ H+       Ht++
  Jcr4S00350.30 17 QTCDFCNLKAAVLFCKADSAKLCLVCDQKVHSAnalslkHTRS 59
                   68*****************************668888888876 PP
2CCT66.29.1e-23379421143
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                    R +a+lRYkeK+k R+F+K+irYesRKa+A++R+RvKGrFvk+
  Jcr4S00350.30 379 RGNAMLRYKEKKKARRFDKQIRYESRKARADTRQRVKGRFVKA 421
                    7789*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.7E-111461IPR000315B-box-type zinc finger
PfamPF006433.4E-61859IPR000315B-box-type zinc finger
CDDcd000215.71E-71961No hitNo description
PROSITE profilePS501199.3571961IPR000315B-box-type zinc finger
PfamPF062035.9E-17379421IPR010402CCT domain
PROSITE profilePS5101715.239379421IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMEDSLNSDS IHAFLIQTCD FCNLKAAVLF CKADSAKLCL VCDQKVHSAN ALSLKHTRSL  60
ICDNCGDELA SIQGVNDNLI LCHDCDSASS SVRNRIPIEG FIGCPSAIKI ASLFGFDLNP  120
SSFTDSDFGF WQEMLNLQDL VVPSGTSSVL LRYGEYRREM HEQLVDMGKR ETEKLGSETT  180
TGRCAQQGNS KSFEVAVDAW FDKQIPSISF PMLPNQGEEE DAGEDLLRDY YSIHEETQIW  240
DFQTGRRRDC AQPGQEEAVY DVNVPDLTIK NCCNITKETA FNTRKVLDDT RRINCLTPFE  300
DVLSKNTCCS QQLSRHTART EESKKTSLME LSSQSKLVKA KTCSSPIHFQ VVEKPHPAWI  360
GTLDEVRSDY DMELFAQNRG NAMLRYKEKK KARRFDKQIR YESRKARADT RQRVKGRFVK  420
AGHLLHGPSV LPTLEEVPGK LVVGHIISSS Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067323.10.0zinc finger protein CONSTANS-LIKE 10
RefseqXP_020533537.10.0zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A067L3N80.0A0A067L3N8_JATCU; Uncharacterized protein
STRINGcassava4.1_026736m1e-140(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47372843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.17e-63B-box type zinc finger protein with CCT domain